A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.

(Experimental) Yet Another bioinformatics workflow engine https://traitome.github.io/oxo-flow/documentation/

A flexible processor for sequencing reads

A collection of awesome bio-foundation models, including protein, RNA, DNA, gene, single-cell, and so on.

Spiritual successor to picard for sequencing qc

Detection of incorrectly labeled sequences across kingdoms

atch lets you attach and detach terminal sessions

Assembly and binning of metagenomes

fastVEP: High-performance Variant Effect Predictor in Rust

🔬 ⭕ Plasmid exploration of bacterial genomes

Scripts for manual connections to Private Internet Access

Build native Windows desktop apps with R. Zero ports. Native IPC. Ships as a single exe.

Randomly subsample sequencing reads or alignments

Python OncoPrint library based on Matplotlib

NCBI C++ Toolkit package sources

Vim plugin for Nextflow

dimensionality reduction in ggplot framework

Alternative R Frontend — a modern R console written in Rust

A poor man's dependency free grammar of data manipulation

A safer complement of R, the legendary programming language for statistic and datasciences !

A header image generator for your Github profile Readme

A curated list of awesome R packages, frameworks and software.

This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.

Easily Create Interactive Oncoplots

A grammar of graphics for comparative genomics

KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files

Easily produce visualisations for exploratory data analysis in R

molecular point group symmetry lib

taxonomic classes for R

A minimal copy fastq and fasta reader built for parallel support and paired end processing