Rust cli tool for converting bio filetypes into analysis ready formats. Designed to support the clinsigs pipeline

Neovim config

Nextflow pipeline for mutational signature analysis designed for clinical pipelines

A rust library for working with DNA and RNA sequences

A rust cli tool for converting SV vcfs to bedpe

A lightweight dataframe manipulation package for R

Configuration files to speed up setup on a new machine

Micrite sleuth pipeline using typed workflows, processes, and record types

Creating circos plots from tidy multiomics data

Compare the fastqs assigned to two different species

What the Package Does (One Line, Title Case)

Download and index microbial reference genomes for use in micrite-sleuth pipeline

A nextflow pipeline to detect microbial reads from cancer bams.

A nextflow pipeline for identifying plasmids from fastq

An unwieldy nextflow pipeline for kitchen sink signature analysis

A set of constitutions to inform codex behaviour

Fetch a subsample of paired human reads that map well to the reference genome. Used to compare to microbial reads for Phred quality, GC bias, etc

Assertions with Beautiful and Customizable Error Messages

An R package for visualising blast results

Making your first oncoplot

repo listing packages to include in a personal cran-like repository (r_universe)

Easily Create Interactive Oncoplots

A collection of mock datasets that can be visualised with ggoncoplot

Parse and visualise the results of taxonomic classifiers

An R package for loading common krakenuniq database taxonomies

Assesses whether two molecules could feasibly assemble into common geometric forms (e.g. face/edge capped tetrahedra/cubes)

A nextflow pipeline for detecting microbial DNA from WGS of human biopsy samples

What the Package Does (One Line, Title Case)