☕️ This repository contains protocol and code to reproduce the results for Droplet Paired-Tag manuscript

Cross-cell type gene expression prediction with deep learning reveals systematic cis-regulatory patterns at hierarchical levels

An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.

A computational framework to detect Condensate-like chromatin-associated proteins co-occupancy Signatures

Single-cell epigenomics analysis tools

resources for faculty

SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data

Zeta score method to analysis multiple targets multiple hits screening

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

Analysis of Paired-Tag datasets

Single-cell Transcriptome and Regulome Analysis Pipeline

Toolkit for processing sequences in FASTA/Q formats

Python - 100天从新手到大师

Apache ECharts is a powerful, interactive charting and data visualization library for browser

An open source re-implementation of Diablo 2

Paired-seq

ChIP-seq analysis notes from Ming Tang

Uniform Manifold Approximation and Projection

Table of software for the analysis of single-cell RNA-seq data.

<<------ Use SnapATAC!!

LD Score Regression (LDSC)

RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.

RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.

Repository to track the progress in Natural Language Processing (NLP), including the datasets and the current state-of-the-art for the most common NLP tasks.

An extensible python-based genomics visualization engine