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histocartography Public
Forked from BiomedSciAI/histocartographyA standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in computational pathology.
Python GNU Affero General Public License v3.0 UpdatedDec 28, 2025 -
deep-learning-drug-response Public
Deep Learning based Drug Response Predication with public Omics datasets
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multiple-instance-attention Public
Forked from mahmoodlab/CLAMData-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering
Python GNU General Public License v3.0 UpdatedAug 9, 2022 -
wsi-heatmap Public
WSI Clustering Heatmap with ResNet Features
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CycleGAN-PyTorch Public
Forked from Lornatang/CycleGAN-PyTorchA very simple implementation of cyclegan, which is based on pytorch.
Python Apache License 2.0 UpdatedJan 4, 2022 -
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HistoQC Public
Forked from choosehappy/HistoQCHistoQC is an open-source quality control tool for digital pathology slides
Python BSD 3-Clause Clear License UpdatedJun 30, 2021 -
BCO-Execution Public
Repository to share data, workflows, apps, and scripts working toward the goal of execution of BioCompute Objects (BCO).
Common Workflow Language GNU Affero General Public License v3.0 UpdatedJun 10, 2021 -
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hover_net Public
Forked from vqdang/hover_netSimultaneous Nuclear Instance Segmentation and Classification in H&E Histology Images.
Python MIT License UpdatedApr 26, 2021 -
NCI-DOE-Collab-Pilot1-Tumor_Classifier Public
Forked from CBIIT/NCI-DOE-Collab-Pilot1-Tumor-ClassifierPython MIT License UpdatedApr 9, 2021 -
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pathology-images-analysis-using-CNN Public
Forked from sdw95927/pathology-images-analysis-using-CNNScripts for https://www.nature.com/articles/s41598-018-27707-4, using Convolutional Neural Network to detect lung cancer tumor area
Python UpdatedApr 8, 2021 -
breastCaPathologyTranscriptomics Public
Forked from hms-dbmi/breastCaPathologyTranscriptomicsIntegrative Transcriptome-Histopathology Analysis for Breast Cancer Classification
Python UpdatedJan 15, 2021 -
Pymaceuticals-pymaceuticals_starter.ipynb Public
Forked from pnguenda/Pymaceuticals-pymaceuticals_starter.ipynb# Matplotlib Homework - The Power of Plots ## Background What good is data without a good plot to tell the story? So, let's take what you've learned about Python Matplotlib and apply it to a real-w…
Jupyter Notebook UpdatedJul 18, 2020 -
bcpm-pfda-challenge Public
My Solution for PrecisionFDA Brain Cancer Predictive Modeling and Biomarker Discovery Challenge
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LightGBM Public
Forked from lightgbm-org/LightGBMA fast, distributed, high performance gradient boosting (GBT, GBDT, GBRT, GBM or MART) framework based on decision tree algorithms, used for ranking, classification and many other machine learning …
C++ MIT License UpdatedJan 15, 2020 -
awesome-machine-learning Public
Forked from josephmisiti/awesome-machine-learningA curated list of awesome Machine Learning frameworks, libraries and software.
Python Creative Commons Zero v1.0 Universal UpdatedNov 15, 2019 -
brain-tumor-segmentation-unet Public
Forked from adityajn105/brain-tumor-segmentation-unetImplementation of U-Net from paper "U-Net: Convolutional Networks for Biomedical Image Segmentation" to segment tumor in given MRI images.
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NucleiSegmentation Public
Forked from mahmoodlab/NucleiSegmentationcGAN-based Multi Organ Nuclei Segmentation
Python UpdatedMay 8, 2019
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