Stars
A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in computational pathology.
KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph
Drift Detection for your PyTorch Models
A tool to find sequencing data and metadata from public databases.
Python package built to ease deep learning on graph, on top of existing DL frameworks.
Source code for the X Recommendation Algorithm
A Python implementation of global optimization with gaussian processes.
Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking
ZoomMIL is a multiple instance learning (MIL) method that learns to perform multi-level zooming for efficient Whole-Slide Image (WSI) classification.
Deep Learning-based Frozen Section to FFPE Translation
Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell
An example project of how to use a U-Net for segmentation on medical images with PyTorch.
Graph Neural Network Library for PyTorch
SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph convolutional network
Easy genetic ancestry predictions in Python
Master the command line, in one page
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
A Python toolkit for pathology image analysis algorithms.
Image-to-Image Translation in PyTorch
DSMIL: Dual-stream multiple instance learning networks for tumor detection in Whole Slide Image
Train a model to predict gene expression from histology slides.
Federated Learning for Computational Pathology - Medical Image Analysis
A powerful and flexible machine learning platform for drug discovery
Pretrained model for self supervised histopathology
Simultaneous Nuclear Instance Segmentation and Classification in H&E Histology Images.
A curated list of awesome deep learning applications in the field of computational biology
A curated list of awesome Bioinformatics libraries and software.