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Ivy: software package for detection of RNA editing sites based on high-throughput sequencing data.

Build Status

Ivy is currently under development...

Ivy includes 2 command line tools:

  • ivy is detection tool for RNA editing events.
  • edit_bench is benchmarking tool to test the detection accuracy.

System requirements

  • Python 2.7+ (v2.7.5 recomended)
  • Unix like operating system (tested by OS X 10.9 and RedHat)

Dependencies

The required dependencies to install the Ivy is pysam, pyVCF, fisher, and matplotlib.

Installation

pip install numpy
pip install matplotlib
python setup.py install

Documentation

Licence

Ivy is available under the GPLv2 license. See the LICENSE file for more information.

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Detection method for RNA editng sites based on high-throughput sequencing data

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