Structural variation caller using third generation sequencing

Aliro: AI-Driven Data Science

QuPath - Open-source bioimage analysis for research

Making large AI models cheaper, faster and more accessible

genes and genomes at your fingertips

pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy)

A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline

DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) data.

Embeddable genomic visualization component based on the Integrative Genomics Viewer

R toolkit for single cell genomics

A standalone and free application to explore genetics variations from VCF file

samblaster: a tool to mark duplicates and extract discordant and split reads from sam files.

RNA-seq analysis pipeline for detection of gene-fusions

Robust Speech Recognition via Large-Scale Weak Supervision

The next version of bwa-mem

📦 🐳 Dockerfiles and documentation on tools for public health bioinformatics

ABRA2

A python parser for reading fcs files supporting FCS 2.0, 3.0, 3.1

ALLSorts is a B-Cell Acute Lymphoblastic Leukemia (B-ALL) subtype classifier. From gene expression counts to over 18 subtypes.

BWA-MEME: Faster BWA-MEM2 using learned-index

By study this, it won't be costly or time-consuming to customize a NGS data analysis pipeline