Stars
Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly
You like pytorch? You like micrograd? You love tinygrad! ❤️
Cell2Sentence: Teaching Large Language Models the Language of Biology
A topic-centric list of HQ open datasets.
🥢像老乡鸡🐔那样做饭。主要部分于2024年完工，非老乡鸡官方仓库。文字来自《老乡鸡菜品溯源报告》，并做归纳、编辑与整理。CookLikeHOC.
The AI developer platform. Use Weights & Biases to train and fine-tune models, and manage models from experimentation to production.
Python port of the R Bioconductor `seqLogo` package
Matplotlib styles for scientific plotting
Parallel Construction of Suffix Arrays in Rust
Accelerating the deduplication and collapsing process for reads with Unique Molecular Identifiers (UMI). Heavily optimized for scalability and orders of magnitude faster than a previous tool.
Formalizing and benchmarking open problems in single-cell genomics
This API provides programmatic access to the AlphaGenome model developed by Google DeepMind.
Identify and quantify MHC eluted peptides from mass spectrometry raw data
BamQuery provides RNA-seq quantification for a given peptide (from 8 to 11 residues) in chosen RNA-seq samples (single or bulk).
A framework for training graph neural networks to untangle assembly graphs obtained from OLC-based de novo genome assemblers.
⚡ TabPFN: Foundation Model for Tabular Data ⚡
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
A motley crew of agents developed by the Monarch Initiative
Aggregate results from bioinformatics analyses across many samples into a single report.
Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)
The open source repository for the Causal Modeling in Machine Learning Workshop at Altdeep.ai @ www.altdeep.ai/courses/causalML