Whole Brain Simulation with Python and Numba

Whole Brain Simulation with Python and Numba

Non-linear warps between common rhesus macaque brain templates

Repository for Docker build and run scripts for ANTsR, LESYMAP, LINDA

How to create fancy GIFs from an MRI brain image

3D convolutional neural network for MRI brain extraction

APPIAN is an open-source automated software pipeline for analyzing PET images in conjunction with MRI. The goal of APPIAN is to make PET tracer kinetic data analysis easy for users with moderate co…

Kinetic models for dynamic PET analysis

Official elastix repository

Official public repository of Gate

Code and model of article "End-to-end learning of brain tissue segmentation from imperfect labeling" https://arxiv.org/abs/1612.00940

Partial Volume Correction in PET

framework to apply convolutional neural networks to neuroimaging surfaces

NeMo brain tractograms tool

A python interface to the MINC 2 library, allowing use of numpy arrays to access MINC data, and other such similar goodies, developed by Jason Lerch

Statistics for MINC volumes: A library to integrate voxel-based statistics for MINC volumes into the R environment. Supports getting and writing of MINC volumes, running voxel-wise linear models, c…

Medical Image NetCDF