tcgabiolinks

TCGAbiolinks

TCGAbiolinksGUI code development for R/Bioconductor submission http://tcgabiolinks.fmrp.usp.br:3838/

Example data to TCGAWorkflow

Examples on processing and working with TCGA mutation and RNA-Seq data

Nextflow pipeline integrating TCGA multi-omics with MOFA and downstream LASSO to reveal tissue-specific oncogene selection pressures

Genomic Data Commons Query

Example workflow for cancer genomics analysis using TCGA data

Scripts to manage biotab files from TCGA.

TCGA Colorectal Cancer RNA seq Data Analysis Pipeline

Creating a multi-plot for the representation and comparison of clinical data among TCGA cancer datasets.

Somatic mutations in TCGA lung adenocarcinoma — maftools workflow