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vcf
Here are 190 public repositories matching this topic...
Structural variant toolkit for VCFs
benchmarking data-science bioinformatics genomics sequencing vcf annotation-tool structural-variation vcf-comparison sv-merging
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Mar 21, 2026 - Python
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
snps binary nexus vcf phylogenetics alignment fasta snapp phylip vcf-files polyploid haploid phylogenetic-analysis outgroup convert-snps vcf-format phylip-matrix diploid
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Jul 7, 2023 - Python
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
bioinformatics snps medicine genomics genome cancer biology vcf ensembl medical cancer-genomics genome-annotation proteomics gtf bed cancer-genomes genome-sequencing genome-browser genomes csv-parser
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Oct 7, 2025 - Python
A framework for state-of-the-art pre-trained bio foundation models on genomics and transcriptomics modalities.
bioinformatics rna-seq deep-learning biology gene-expression vcf artificial-intelligence transformer rnaseq rna dna-sequences uce evo2 pre-training pre-trained-model foundation-models scgpt geneformer transcriptformer helixmrna
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Mar 24, 2026 - Python
Bayesian genotyper for structural variants
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Mar 6, 2021 - Python
tools for reading, writing, generating, merging, and remapping SNPs
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Jan 28, 2026 - Python
Python 3 library with good support for both reading and writing VCF
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Oct 2, 2025 - Python
Python API for comprehensive GWAS analysis using GEMMA
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Sep 6, 2023 - Python
🔧 Simple script in python to convert CSV files to VCF
python converter csv tools script phone-number contacts python3 vcf vcard email-template contact moduland phonebook contacts-app variant-calls contacts-manager comma-separated-values contacts-book phonebooks
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Mar 22, 2024 - Python
vembrane filters VCF records using python expressions
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Mar 23, 2026 - Python
Generic human DNA variant annotation pipeline
docker workflow gene singularity vcf variants snv vep disease-gene-association indels annotation-tool vcfanno germline variant-annotations annotation-framework snvs
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Feb 13, 2024 - Python
Scalable SQLite database for fast querying of gnomAD variant annotations (allele frequency, depth, population metrics). Supports gnomAD v2-v4, WGS and WES.
python bioinformatics database annotation genomics genetics sqlite vcf population-genetics whole-genome-sequencing variant-annotation variant-analysis exome-sequencing rare-variant-analysis gnomad allele-frequency
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Mar 8, 2026 - Python
VarFish: comprehensive DNA variant analysis for diagnostics and research
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Mar 20, 2026 - Python
A python parser to simplify and build the VCF (Variant Call Format).
converts vcf tableview haplotypes vcftools variant-annotation phasing vcf-files python-parser phase-extender phase-stitcher chrom
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Oct 30, 2024 - Python
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