Personal Cancer Genome Reporter (PCGR)

A collection of scripts and notes related to genomics and bioinformatics

Cancer Predisposition Sequencing Reporter (CPSR)

visual analysis of your VCF files

Suit of R-scripts to perform landscape genomic analyses

Splicing Prediction Pipeline

Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer

Scripts in R for Landscape Genomics Analyses v.2

Population Genomics Pipeline used for SNPs data from VCF files.

Basic R package for VCF reformatting (json and tab-delimited text)

R-based pipeline/script to implement a Genome-Wide Association Study (GWAS) analysis based on the RAINBOWR package

PopGenHelpR is an R package that estimates commonly used population genomic statistics and generates publication quality figures.

Read/write VCF contact files with R

Cancer variant data from genome-wide association studies (GWAS)

Scripts in R for analyses of Isolation by Distance (IBD) - PART 2 in LANDSCAPE GENOMICS PIPELINE

The goal of this project is to create a R package and executable scripts to visualize variants in Variant Call Format (VCF) files and Bcftools processed tab-delimited files.

A variant annotation tool that parses vcf files and fetches variant information from the Ensembl Variant Effect Predictor (VEP) REST API

An R package and Web App for efficient quality control of human whole-genome and whole-exome datasets

Tillandsia phylogenomics and hybridization, Yardeni et al., 2025

R package for working with vcf files