biosails / pheniqs Star 30 Code Issues Pull requests Discussions Fast and accurate sequence demultiplexing autocomplete tagging sequencing barcode sam robust tag bam fastq multiplexing cram demultiplexing classifiers Updated Mar 18, 2026 C++
lityrgia / selfclean-injector Star 9 Code Issues Pull requests Manual map injector which cleaning itself from different places after inject bam silent-injector shell-bags Updated Jan 3, 2025 C++
ppyne / c64diskutil Star 5 Code Issues Pull requests Commodore 64 disk image utility qt filesystem commodore commodore-64 bam disk-utility commodore64 geos sectors qt6 vlir Updated Aug 17, 2022 C++
lindenb / x11hts Star 5 Code Issues Pull requests X11 related utilities for hts visualization bioinformatics hts x11 sam bam htslib cnv Updated May 10, 2019 C++
alshai / varcount Star 4 Code Issues Pull requests Outputs alignment coverage over a predefined set of variants coverage vcf variants alignment bam Updated Sep 22, 2021 C++
stjude / teltale Star 3 Code Issues Pull requests Compute telomeric read fractions in a BAM file. next-generation-sequencing bam telomeres Updated Aug 23, 2022 C++
gear-genomics / halo Star 3 Code Issues Pull requests Halo: Haplotype processor haplotypes alignment bam single-cell Updated Apr 16, 2026 C++
dantaki / chromCov Star 1 Code Issues Pull requests Calculate Chromosome Coverage with C++ sequencing bam bamtools Updated Nov 9, 2017 C++
stjude / fuzzion Star 1 Code Issues Pull requests Fuzzy fusion finder for next generation sequencing data. genomics next-generation-sequencing fusion bam Updated Oct 8, 2018 C++
dantaki / rgged Star 0 Code Issues Pull requests Alter or Add Read Group Tags to BAM Files bam-files sequencing bam Updated Apr 24, 2018 C++
tuenhidiy / DIGITAL_CLOCK_MATRIX_32x32 Star 0 Code Issues Pull requests bam led-matrix ds3231 arduino-clock morphing-clock bit-angle-modulation rtc-arduino matrix-32x32 Updated Jun 4, 2019 C++
martinjvickers / write_sam_from_stream Star 0 Code Issues Pull requests Writing a SAM file from a stream of data sam io bam seqan Updated May 24, 2017 C++
AntoineHo / COCOA Star 0 Code Issues Pull requests Coverage Of COntigs Alignment coverage bioinformatics genome assembly visualisation sam bam contigs Updated Dec 4, 2018 C++