C library for high-throughput sequencing data formats

A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too

Fast sequencing data quality metrics

'htslib' based 'Duckdb' Extenstion for High Throughput Sequencing File Formats

A tool to extract ATGC/Indel read counts at user specific loci from BAM files

Use simple expressions to filter a BAM/CRAM file

Calculate Peak-to-Trough Ratio (PTR), plot coverage graph, and perform quality control over contigs in a single pipeline integrating Glimmer3, Bowtie2, Sickle, and algorithms in R.

Convert common binary and text genomic formats to BED

Fast pythonic BAM processing according to the HTS format specifications..

hyper-fast tool for coverage calculation