bam

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Germline structural variant calling pipeline for short read WGS datasets

workflow bioinformatics pipeline genomics nextflow ngs manta bam survivor structural-variants smoove tiddit germline-variant-calling annotsv dsl2 australian-biocommons

This repo contains pipeline implemented using the nextflow workflow management system for the analysis of genomics data

Nextflow pipeline to convert FASTQ files to BAM for WGS and RNA-seq data

bioinformatics pipeline nextflow alignment bam wgs fastq

Nextflow pipeline to map long reads to reference

ngs alignment bam fastq oxford-nanopore

Report summary statistics relating to quality of bam files with Nextflow

bioinformatics genomics nextflow ngs alignment multiqc sambamba bam samtools qualimap mosdepth australian-biocommons

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