NGLess: NGS with less work

Detecting contamination in NGS data and multi-species analysis

Home Assistant integration - Spa Client

Docker for 4DN Hi-C processing pipeline

A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too

Whole Exome/Whole Genome Sequencing alignment pipeline

secondary analysis pipelines parallelized with apache spark

The DKFZ alignment workflow plugin originally developed at the eilslabs

Analysis pipeline for processing paired-end Illumina reads obtained after ancient mtDNA target enrichment capture.

JNI code for bwa mem

VAP : For Reference mapping and Variant detection.

Nextflow pipeline for BWA, BWA2 and STAR alignments

Nextflow Alignment Pipeline - from fastq.gz to sorted bam with ease

Germline Variant Calling Pipeline built in Snakemake

A modular version of SparkBWA

A streamlined pipeline for germline variant calling on chromosome 11 using GATK. This repository includes workflows for data preprocessing, variant discovery, and annotation, with a focus on understanding genetic variations linked to disease-associated genes.

Ini adalah project Client-Side dari kelas BWA MERN 2021

Map and post-process your bams for SNP calling

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