coevolve R package for Bayesian generalized dynamic phylogenetic models using Stan

Evolutionary Transcriptomics with R

cancereffectsizeR: Estimate somatic mutation rates and quantify selection in cancer

R package containing datelife's core functionality

Adapted chi-squared and CMH test to evolve and resequenced data. Includes drift and pool sequencing variance in the tests

Imports Stratovan Checkpoint files (*.ckpt) directly into R.

A shiny application that identifies the phenotype driving genes in evolved E. coli using Evolutionary Action.

other analyses of diverse topics including food, demography, tourism, mapping, and more

Create Interactive Visualisation of Taxonomic Hierarchy with R

Repository of the R-packageGen3sis

Supplementary material, data and code from the reviewed preprint "Páramo, A., Mocho, P., Escaso, F., & Ortega, F. (2025). Evolution of hind limb morphology of Titanosauriformes (Sauropoda) analyzed via 3D GeoMorpho reveals wide-gauge posture as an exaptation for gigantism. eLife, 13" DOI: https://doi.org/10.7554/eLife.92498.1

SEEPS: Sequence Evolution and Epidemiological Process Simulator

paleobuddy: an R package for simulating diversification dynamics, fossil records and phylogenies in R.

This repository includes all the analyses related to the influence of environment in the early stages of evolution in the synthetic polyploid species Arabidopsis kamchatica

Official GitHub repository for the R package "Species Identity and Evolution in R" (spider)

Daphnia gene family evolution.

This repository contains data and scripts to study phenotypic macroevolution and ecogeographical rules in Rana genus

Digitalized homolog cluster maps reveal the complex dynamics of Gene Origin, Duplication, and Loss.

Evolutionary genomics of shared mutations within the Daphnia pulex species complex.

Code and data for "Tempo and mode of diapause evolution in butterflies" Halali et al., 2024