Multi-platform, free open source software for visualization and image computing.

⚠️ OBSOLETE | Multi-platform, free open source software for visualization and image computing.

Advanced Normalization Tools (ANTs)

Neuroimaging analysis and visualization suite

dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC

Diffusion MRI analysis and visualization in 3D Slicer open source medical imaging platform.

The Blue Brain BioExplorer (BBBE) is a tool for data visualization experts and scientists to extract and analyze scientific data from visualization and interactive exploration

FRIEND engine is a new implementation of the FRIEND software, a fMRI neurofeedback processing package, already available on the NITRC repository

NeuroInformatics Database

Analysis tools for sub-millimetre MRI of the cerebral cortex

DMRITool is an open souce toolbox for reconstruction, processing and visualization of diffusion MRI data (DWI, tensor, ODF,EAP, fibers etc.).

Perform automatic skull-stripping for neuroimage analysis

Framework to compute average cortical profiles per ROI.

a simple C++ graph analysis library

The squirrel neuroimaging data sharing library

Command-line Bruker format converter

Neuroimaging analysis and visualization suite

Analysis tools for 3D images of the cerebral cortex at submillimetre resolution

A header-only, no-dependency, C++11 library for accessing FreeSurfer neuroimaging file formats.

A specialized image analysis tool for automated detection and analysis of dendritic spines in neuronal images. 2D Span Auto streamlines workflow for neuroscience researchers with intuitive modules for image processing, dendrite extraction, and morphological analysis. The software features multiple denoising and binarization methods, accurate spine