satijalab / seurat
R toolkit for single cell genomics
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R toolkit for single cell genomics
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
Repository for Programming Assignment 2 for R Programming on Coursera
R package for detecting doublets in single-cell RNA sequencing data
GCAM -- The Global Change Analysis Model
A curated list of awesome network analysis resources.
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
Accurate sample inference from amplicon data with single nucleotide resolution
Simple Features for R
An implementation of the Grammar of Graphics in R
'ggplot2' Based Publication Ready Plots
Tree-sitter grammar for R
Fast, sensitive and accurate integration of single-cell data with Harmony
Inferring CNV from Single-Cell RNA-Seq
Make Complex Heatmaps
Code accompanying the book "Machine Learning for Hackers"
renv: Project environments for R.
NicheNet: predict active ligand-target links between interacting cells
R toolkit for the analysis of single-cell chromatin data
Dynamic Documents for R