FastOMA is a scalable software package to infer orthology relationship.

R package to create packed image mosaics (inspired by https://github.com/qnzhou/Mosaic)

Conda recipes for the bioconda channel.

A taxonomic toolbelt for R

Nextstrain build for SARS-CoV-2

Removes large or troublesome blobs like git-filter-branch does, but faster. And written in Scala

getting data out of KEGG w/o any subscription

Feature-aware orthology prediction tool. Provided data package: Quest for Orthologs reference gene sets 2019.

R package, using vis.js library for network visualization

An R/shiny widget for cytoscape.js