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Commits on Feb 21, 2014

• Provide framework to make data files optional with switch to add new ones to avoid large downloads not used by default. Turn off gerp_bp download by default since it's 2/3 of the current download d…

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Commits on Jan 21, 2014

• add docs for querying gene tables

  

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• add gene tables to database schema

  

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Commits on Jan 16, 2014

• Update loading.rst

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Commits on Jan 8, 2014

• Update conf.py

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• Update conf.py

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• Update conf.py

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• Update conf.py

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• Update conf.py

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Commits on Jan 5, 2014

• [ENH] added COSMIC mutation info with cosmic_ids column. Cheers to @chapmanb.

  

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Commits on Jan 3, 2014

• Release v0.6.4

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Commits on Jan 2, 2014

• Add documentation on installing behind a proxy. Thanks to Bertie Seyffert

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Commits on Dec 25, 2013

• Provide ability to install gemini without data, and subsequently update only data. Allows separation of code from data to can distribute code-only versions in VMs and docker containers.

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Commits on Dec 14, 2013

• [ENH] add VISTA enahncers as new annotation.

  

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Commits on Dec 10, 2013

• [DOC] update history for 0.6.3.2

  

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Commits on Nov 26, 2013

• Update querying.rst

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Commits on Nov 19, 2013

• Update history.rst

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• Update history.rst

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Commits on Nov 7, 2013

• Update history.rst

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• Added --show-families option.

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• Merge branch 'master' of github.com:arq5x/gemini

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• Added --show-families option to query output.

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• [DOC] update history

  

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Commits on Oct 30, 2013

• Fixed argument name.

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• Fixed formatting.

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• Added gemini amend to the documentation.

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Commits on Oct 28, 2013

• Added --nonsynonymous option to the C-alpha test.

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Commits on Oct 25, 2013

• Merge branch 'master' of github.com:arq5x/gemini

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• Added --carrier-summary-by-phenotype.

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Commits on Oct 17, 2013

• edit comp_hets doc

  

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Commits on Oct 16, 2013

• Added loading changes to the changelog.

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• Remove --lsf-queue --torque-queue, etc options for loading.

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Commits on Oct 15, 2013

• Added documentation for SLURM.

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Commits on Oct 12, 2013

• Create the samples table from the existing schema during merge.

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Commits on Oct 11, 2013

• Added --passonly documentation.

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