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Commits on Mar 26, 2015

• probs with dev req

  brentp

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Commits on Mar 17, 2015

• Skip URLs in requirements.txt in setup.py.

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  roryk

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Commits on Jul 18, 2014

• v0.9.1: Remove ez_setup and other setup.py magic and require python with setuptools installed.

  chapmanb

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Commits on Nov 7, 2013

• Merge setup.py fixes

  chapmanb

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• Additional fixes to enable browser in standard installs: include jinja2 dependency and clean up requirements. Fixes #168

  chapmanb

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• Update setup.py

  arq5x

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• Fix browser mode.

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  lbeltrame

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  chapmanb

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• Update setup.py

  arq5x

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• Update setup.py

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  arq5x

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Commits on Oct 10, 2013

• Added permutation testing.

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  arq5x

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  roryk

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Commits on Sep 3, 2013

• Bump cyvcf requirement to fix edge case bug in AD parsing: chapmanb/bcbio-nextgen#68

  chapmanb

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Commits on Aug 13, 2013

• revert to numpy 1.6.0 to enable OS X custom installations

  

  arq5x

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Commits on Aug 11, 2013

• Synchronize python requirements between setup.py and requirements.txt and ensure versions match anaconda. #144

  chapmanb

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Commits on Aug 9, 2013

• New subtool: burden tests, added.

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  roryk

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Commits on Aug 8, 2013

• Merged.

  roryk

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• Merge branch 'master' of github.com:arq5x/gemini

  roryk

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Commits on Jul 31, 2013

• Provide more flexible versioning in the setup.py and requirements.txt to allow usage of anaconda pre-built packages during installation

  chapmanb

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Commits on Jul 10, 2013

• Added scipy as a dependency.

  roryk

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• Added high-impact burden summary and c-alpha test.

  roryk

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Commits on Jul 9, 2013

• Bump ipython-cluster-helper to the latest revision

  chapmanb

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Commits on Jun 24, 2013

• Bump version of cyvcf to fix installation issues from missing files in 0.1.6

  chapmanb

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Commits on Jun 22, 2013

• Installation fixes: bump pysam and cyvcf requirements. Ensure gemini configuration is written even if all downloads fail to allow clean updates via 'gemini update'

  chapmanb

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Commits on Jun 12, 2013

• Update setup.py

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  arq5x

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Commits on Jun 9, 2013

• Fixes for reported installation issues: new version of ipython-cluster-helper with only IPython 0.13.2 requirement; better error message for missing configuration data; only require configured data…

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  chapmanb

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Commits on Apr 25, 2013

• support for GERP BigWig annotations. SLOW.

  

  arq5x

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Commits on Mar 15, 2013

• Added iPython merging, piping and SGE support.

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  roryk

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Commits on Feb 27, 2013

• Restrict pyparsing version dependency to Python 2.x compatible versions

  chapmanb

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Commits on Jan 9, 2013

• require cyvcf 0.1.5

  

  arq5x

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Commits on Dec 30, 2012

• leaner web browser; web query now supports sample genotype access and filters.

  

  arq5x

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Commits on Dec 28, 2012

• [ENH] store the depth of aligned sequence for each sample. The _genotype_'s DP column.

  

  arq5x

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Commits on Sep 14, 2012

• add dependency for python-graph-dot

  

  arq5x

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Commits on Aug 20, 2012

• update setup.py to req. python-graph-core

  

  Aaron Quinlan

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• update setup.py to req. python-graph

  

  Aaron Quinlan

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Commits on Jul 24, 2012

• new master

  

  Uma Paila

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Commits on Jul 18, 2012

• require >= cyvcf 0.1.3

  

  Aaron Quinlan

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