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Commits on Oct 30, 2013

• Update Miniconda installer to latest version.

  chapmanb

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Commits on Sep 19, 2013

• Avoid using python environmental variables when running gemini, avoiding issues where PYTHONHOME or PYTHONPATH point to other library locations

  chapmanb

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Commits on Sep 18, 2013

• Improve installation and update process to be resiliant to changes in local gemini repo that holds test scripts

  chapmanb

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Commits on Sep 10, 2013

• Update gemini installer to use latest Miniconda release; remove extra install script in docs

  chapmanb

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Commits on Sep 3, 2013

• Giving up and removing sed fix for installer. It fixes a minor issue and causes too many unexpected problems

  chapmanb

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• Final installer fix for sed issues on MacOSX/Locales. Thanks to @jxchong

  chapmanb

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• Another attempt at cleaned up sed command to fix issues reported on MacOSX by @jxchong

  chapmanb

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• Provide a cleaned up sed command to remove potential paging in Anaconda license. Thanks to @jxchong

  chapmanb

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Commits on Aug 26, 2013

• Avoid pauses in Anaconda license that depend on screen size. Fixes chapmanb/cloudbiolinux#101

  chapmanb

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Commits on Aug 23, 2013

• Detect partially prepared anaconda directories and recover by removing and re-installing. chapmanb/cloudbiolinux#105

  chapmanb

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Commits on Aug 21, 2013

• Provide access to gemini isolated python and pip through symlinked 'gemini_python' and 'gemini_pip' commands in the installation path

  chapmanb

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Commits on Aug 16, 2013

• Provide useful error messages if required tools not present: curl for installing data #201

  chapmanb

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Commits on Aug 11, 2013

• add reminder to update PATH after auto_installer

  

  arq5x

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• add reminder to update PATH after auto_installer

  

  arq5x

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• add reminder to update PATH after auto_installer

  

  arq5x

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Commits on Aug 10, 2013

• try placing pandas and scipy directly in anaconda package list.

  

  arq5x

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Commits on Aug 7, 2013

• Ensure installation is in work directory after external call outs to prevent directory missing errors

  chapmanb

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Commits on Jul 31, 2013

• Catch and remove broken symbolic links to gemini in the PATH when installing and updating

  chapmanb

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• Improved gemini installer: use isolated Anaconda environment instead of virtualenv. Provide resiliancy to download problems from S3

  chapmanb

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Commits on Jun 4, 2013

• Fixes for build issues: install bx-python via a separate command (fixes arq5x/gemini#143) and remove extra bottle.py in bin directory which gets double imported (speculative fix for arq5x/gemini#144)

  chapmanb

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Commits on May 31, 2013

• Another go at an improved installer that handles numpy better. Revert use of system site packages, which caused more problems than it solved and instead install numpy separately. Add documentation …

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  chapmanb

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Commits on May 29, 2013

• Create gemini virtualenv with access to system site packages to avoid needing to rebuild numpy if present

  chapmanb

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Commits on May 27, 2013

• Download and update test suite as part of standard installation process. Have test suite using bash to fix on systems where sh does not point to bash. Add instructions for downloading script on sys…

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  chapmanb

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Commits on Apr 17, 2013

• Pull from upstream

  chapmanb

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Commits on Apr 15, 2013

• use easy_install to install pip

  

  arq5x

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Commits on Apr 5, 2013

• Fixes for gemini installer: install version of pip for MacOX with easy_install, ensure using called python for virtualenv

  chapmanb

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Commits on Apr 1, 2013

• Commandline option to get gemini version; fix for installer on MacOSX; move requirements download to latest revision

  chapmanb

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Commits on Mar 29, 2013

• Remove testing code and point to final requirements

  chapmanb

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• Finalized version of gemini installer included commandline option to update in place and documentation

  chapmanb

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• Initial script for automated gemini installation. Installs python requirements into virtualenv, data into isolated directory, and links executables and 3rd party tools into a tool directory.

  chapmanb

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Commits on May 20, 2012

• user can now install annotation files whereevr they like. gemini remembers where.

  

  Aaron Quinlan

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Commits on Mar 27, 2012

• changed software name from pop to gemini

  arq5x

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