Successful Job Applications and Grants

A slide framework built for agents.

Point Cloud Local Ancestry Inference (PCLAI)

A minimal PyTorch re-implementation of AlphaFold2's model & training

Production-grade engineering skills for AI coding agents.

Identify which human reference genome was used to align a BAM/SAM/CRAM file

fastVEP: High-performance Variant Effect Predictor in Rust

Source code for the book "Math for Deep Learning" (No Starch Press)

Agentic Coding with Claude Code, published by Packt

Oreilly Downloader (PDF, EPUB, Markdown, JSON, Text)

Source Code for Hugging Face In Action (Manning)

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

A fast, programmable molecular viewer for research, scripting, and the web

Fast genomics quality control tools for sequencing data, written in Rust.

Notebooks to follow along with "Deep Learning for Biology" Chapters 2 to 6.

Teams-first Multi-agent orchestration for Claude Code

OmX - Oh My codeX: Your codex is not alone. Add hooks, agent teams, HUDs, and so much more.

Guide to producing a personalized mRNA cancer vaccine.

Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads

Sutskever 30 implementations inspired by https://papercode.vercel.app/ | For Agents, use https://github.com/pageman/Sutskever-Agent | Polyglot / Multi-Backed version at https://github.com/pageman/s…

Transfer HiFi read mappings from their own assembly contigs to a standard reference

genotype and visualize structural variants in the human pangenome graphs

an API for intersections of genomic data

A cat(1) clone with wings.

A tool for sniffing out the differences in vari-Ants