Modified version of Alphafold to divide CPU part (MSA and template searching) and GPU part. This can accelerate Alphafold when predicting multiple structures

Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

MMseqs2: ultra fast and sensitive search and clustering suite

WebGL protein viewer

AlphaFold2 non-docker setup

AutoDock Vina

Open source code for AlphaFold 2.

Hycco is an HMM based method to estimate hybrid chromosomal crossover points using distinguising SNPs from two parental genotypes

SNPbinner is a utility for the generation of genotype crossover points and binmaps based on SNP data across recombinant inbred lines.

Developed at Biopic (PKU) in 2012-2013 for probing meiotic recombination and aneuploidy by analyzing the single cell sequencing data from sperm and oocytes, includes mapping the reads to the refere…

NLR-Annotator upload

小白加速全球唯一发布地址

RES-Scanner is a software package for genome-wide identification and annotation of RNA-editing sites for any species with matched RNA-Seq and DNA-Seq data.

De-Novo Repeat Discovery Tool

Genomic Association Tester

The tRNA adaptation index

A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)

A place to publish data-vizes

bedtools - the swiss army knife for genome arithmetic

Phylogenetic orthology inference for comparative genomics

A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0

Code and manuscript files for Aaron and Karsten's deconvolution paper.

🎨 A colour picker tool for Shiny and for selecting colours in plots (in R)

🔬 Analysis and visualization of Droplet Digital PCR data in R and on the web

Code and manuscript files for Aaron's spike-in manuscript.

zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs