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Starred repositories

33 stars written in TeX
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Deep Learning Book Chinese Translation

TeX 37,286 9,134 Updated Dec 3, 2019

Posit Cheat Sheets - Can also be found at https://posit.co/resources/cheatsheets/.

TeX 6,362 1,943 Updated Apr 9, 2026

Advanced R: a book

TeX 2,457 1,697 Updated Mar 13, 2025

Exercises for the Deep Learning textbook at www.deeplearningbook.org

TeX 1,433 336 Updated Jun 16, 2022

Specifications of SAM/BAM and related high-throughput sequencing file formats

TeX 706 180 Updated Jun 4, 2026

Analysis of single cell RNA-seq data course

TeX 681 351 Updated Apr 11, 2022

An opinionated view of the Tidyverse "dialect" of the R language.

TeX 542 49 Updated Apr 22, 2025

Formalizing and benchmarking open problems in single-cell genomics

TeX 433 88 Updated Jun 3, 2026

A paper on data tidying

TeX 430 483 Updated Feb 7, 2019

Materials for teaching R and Stan

TeX 408 235 Updated Dec 29, 2025
TeX 384 340 Updated Sep 9, 2024

Ultrafast de novo assembly for long noisy reads (though having no consensus step)

TeX 354 69 Updated Jul 19, 2025

Online version of Bischl, B., Sonabend, R., Kotthoff, L., & Lang, M. (Eds.). (2024). "Applied Machine Learning Using mlr3 in R". CRC Press.

TeX 280 70 Updated Jun 8, 2026

Manuscript of the book "Supervised Machine Learning for Text Analysis in R" by Emil Hvitfeldt and Julia Silge

TeX 264 106 Updated Mar 3, 2026

An Introduction to Applied Bioinformatics, 2nd Edition

TeX 145 19 Updated May 14, 2023

R 语言数据科学导论 | Data Science Introduction with R

TeX 138 25 Updated Jan 1, 2026

Repository for Introduction to Data Science Book

TeX 137 59 Updated Jun 3, 2026

"Orchestrating Spatial Transcriptomics Analysis with Bioconductor" (OSTA) online book

TeX 113 42 Updated Jun 15, 2026

Using R and Bioconductor packages for the analysis and comprehension of proteomics data.

TeX 102 36 Updated Mar 18, 2026

An 8 page guide to starting with R - Tidyverse Edition

TeX 94 63 Updated Oct 16, 2019

《ThinkPython2》中文译本

TeX 78 14 Updated Jun 17, 2024

Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://doi.org/10.1093/bioinformatics/btz363

TeX 44 14 Updated Jul 6, 2020

The MetaRbolomics book. A review of R packages in BioC, CRAN, gitlab and github.

TeX 34 10 Updated Mar 23, 2021

Based on their genomic data types and goals, this course will help learners find educational resources and tools to help them process and interpret data.

TeX 17 9 Updated Jun 1, 2026

Advanced steps of the OSCA book

TeX 14 13 Updated Apr 27, 2026

The mlr3 quarto website and accomanying R package.

TeX 10 3 Updated Jun 9, 2026

R package for extracting turn-interactive measures from tabular conversation data.

TeX 9 4 Updated Feb 25, 2022

Repo for Sequencing 16S rRNA gene fragments using the PacBio SMRT DNA sequencing system

TeX 7 Updated Mar 16, 2016

Introduction to Machine Learning for Biology (Workshop @ D-BSSE Retreat 2019)

TeX 7 4 Updated Sep 23, 2021

A review of tools for analysing single-cell RNA-seq data

TeX 7 4 Updated Jun 28, 2018
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