This is a working copy of Interferome from Angela

Pipelines for scHiCAR data processing

Code repository for the Tumor Immune Cell Atlas (TICA) project

Chinese Multi-omics Advances In Sepsis

❗ This is a read-only mirror of the CRAN R package repository. rChEA3 — R Client for the 'ChEA3' Transcription Factor Enrichment API. Homepage: https://github.com/ckntav/rChEA3, https://ckntav.gith…

Re-analysis of data provided by Gihawi et al. 2023 bioRxiv

A simple nextflow pipeline for running kraken2 and bracken in a docker container

Files for the Faits et al. 16S pipeline benchmarking paper

Containerized pipeline for 16S rRNA analyses with Kracken2/Bracken

Single-cell perturbation analysis

scISO-Seq data processing pipeline

Single cell perturbation prediction

SpaNiche is designed to analyze spatial transcriptome data, focusing on the detection of spatial colocalization patterns and cellular interactions.

A computational framework

Mutual connectivity (Q)-based propagation for rare cell identification

A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.

A scalable SCENIC workflow for single-cell gene regulatory network analysis

cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data

xCell 2.0: Robust Cell Type Enrichment Analysis

Comprehensive analysis of single cell RNAseq and spatial transcriptomics in human acute and chronic wounds

Subcellular CCI Deconvolution

中文翻译的 Hands-On-Large-Language-Models (hands-on-llms)，动手学习大模型

✅（已完结）超级全面的 深度学习 笔记【土堆 Pytorch】【李沐 动手学深度学习】【吴恩达 深度学习】【大飞 大模型Agent】

《动手学大模型Dive into LLMs》系列编程实践教程