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DEAP Public
Differential Expression Analysis Pipeline
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CHIPS Public
Forked from liulab-dfci/CHIPSA Snakemake pipeline for quality control and reproducible processing of chromatin profiling data
Python MIT License UpdatedOct 18, 2024 -
SCRIP Public
SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-cell resolution based on scATAC-seq.
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chromVAR Public
Forked from GreenleafLab/chromVARchromatin Variability Across Regions (of the genome!)
R Other UpdatedAug 3, 2020 -
MACS Public
Forked from macs3-project/MACSMACS -- Model-based Analysis of ChIP-Seq
Python BSD 3-Clause "New" or "Revised" License UpdatedJun 30, 2020 -
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pyRNAseq Public
Forked from changxinw/pubRNAseqA python RNAseq analysis pipeline
Python MIT License UpdatedMar 7, 2019 -
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