Python package for creating Sankey flow diagrams in Matplotlib

NeuronMotif: deciphering cis-regulatory codes by layerwise demixing of deep neural networks

Area-weighted venn-diagrams for Python/matplotlib

A toolkit of spatial transcriptomic analysis.

Official PyTorch Implementation of "Scalable Diffusion Models with Transformers"

Unofficial implementation of Palette: Image-to-Image Diffusion Models by Pytorch

A curated list of awesome projects and resources related to GPT, ChatGPT, OpenAI, LLM, and more.

A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

S3norm ver2 + IDEAS epigenetic state / master peak list

Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.

resources for faculty

A high-performance search engine for large-scale genomic interval datasets

Rocky Linux is a community enterprise Operating System designed to be 100% bug-for-bug compatible with Enterprise Linux created in response to the effective discontinuation of CentOS.

Fast, sensitive and accurate integration of single-cell data with Harmony

A module for working with snap files in Python

SCRAT: Single-Cell Regulome Analysis Tool

Analysis Pipeline for Single Cell ATAC-seq

Fast alignment and preprocessing of chromatin profiles

R toolkit for the analysis of single-cell chromatin data

Porting DESeq2 into python via rpy2

Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")

🎆Interactive Online Platform that Visualizes Algorithms from Code

python module to plot beautiful and highly customizable genome browser tracks

A Snakemake pipeline for quality control and reproducible processing of chromatin profiling data

add statistical annotations (pvalue significance) on an existing boxplot generated by seaborn boxplot

Uniform Manifold Approximation and Projection