Stars
Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data
Secure environments for developers and their agents
LLM inference server with continuous batching & SSD caching for Apple Silicon — managed from the macOS menu bar
Powerful system-level package manager for Linux, macOS and Windows written in Rust – building on top of the Conda ecosystem.
C/C++ library to create formatted ASCII tables for console applications
Estimation and inference for Gaussian Mixture Models where the inputs contain missing values.
Technology agnostic long read analysis pipeline for transcriptomes
omo/lazycodex: The coding agent for tokenmaxxers;the one and only agent harness for complex codebases. For your Codex, for your OpenCode
SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.
3D Slicer extension for fully-automatic segmentation of CT and CBCT dental volumes.
MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell transcriptomics data
Structural variation and indel detection by local assembly
Tools to process and analyze deep sequencing data.
This is the alpha version of the CellOracle package
Haplotype-aware CNV analysis from single-cell RNA-seq, ATAC-seq, and multiome
Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtool…
An easy-to-use Hi-C data processing software supporting distributed computation.
⚡ A Fast, Extensible Progress Bar for Python and CLI
Identify spatially variable genes by projecting to morphologically relevant curves