This is a repository of Dockerfile for Rstudio server used in Computational Clinical Psychology Lab, including packages and add-ins that are useful for writing articles with R Markdown in Rstudio. This Dockerfile is based on rocker/rstudio. The GitHub repository for this Docker image is: ykunisato/ccp-r.
Maintainer is Yoshihiko Kunisato (ykunisato@psy.senshu-u.ac.jp)
Keywords: psychology, cognitive science, rstudio, stan, rmarkdown, Quarto
-
Install "Docker Desktop"
-
Open "terminal"(Mac) or "PowerShell"(Windows)
-
Type the following code to pull a Docker container. Change the "password" and "name_of_container" as you like.
Mac(apple silicon)
docker run -e PASSWORD=password -p 8787:8787 -v $(pwd):/home/rstudio -d --name ccpr ykunisato/ccp-r:latest-arm64
or
docker run -e PASSWORD=password -e DISABLE_AUTH=true -p 8787:8787 -v $(pwd):/home/rstudio -d --name ccpr ykunisato/ccp-r:latest-arm64
Mac(intel)
docker run -e PASSWORD=password -p 8787:8787 -v $(pwd):/home/rstudio -d --name ccpr ykunisato/ccp-r:latest-amd64
or
docker run -e PASSWORD=password -e DISABLE_AUTH=true -p 8787:8787 -v $(pwd):/home/rstudio -d --name ccpr ykunisato/ccp-r:latest-amd64
Windows
docker run -e PASSWORD=password -p 8787:8787 -v "%cd%":/home/rstudio -d --name ccpr ykunisato/ccp-r:latest
-
Open the web browser and type "http://localhost:8787/" in the URL bar.
-
You will see the Rstudio on the web browser. Type rstudio in ID column and password that you set in password column.
- If you use a cmdstan, please execute the following code on R console in the Rstudio.
cmdstanr::install_cmdstan(cores = 2)
Once you have installed CmdStan, please run the following code in R console to verify that it is working properly(I am referring to the cmdstanr website).
# packages
library(cmdstanr)
library(posterior)
library(bayesplot)
color_scheme_set("brightblue")
# Compiling a model
file <- file.path(cmdstan_path(), "examples", "bernoulli", "bernoulli.stan")
mod <- cmdstan_model(file)
# Running MCMC
data_list <- list(N = 10, y = c(0,1,0,0,0,0,0,0,0,1))
fit <- mod$sample(
data = data_list,
seed = 123,
chains = 4,
parallel_chains = 4,
refresh = 500 # print update every 500 iters
)
# Result
fit$summary()
mcmc_hist(fit$draws("theta"))
- If you use a tinytex, please execute the following code on R console in the Rstudio.
tinytex::install_tinytex()
tinytex::tlmgr_install("haranoaji")
| Package | Version |
|---|---|
| abind | 1.4-8 |
| acepack | 1.6.1 |
| admisc | 0.38 |
| AER | 1.2-14 |
| afex | 1.4-1 |
| AlgDesign | 1.2.1.2 |
| alr4 | 1.0.6 |
| antiword | 1.3.4 |
| anytime | 0.3.11 |
| aod | 1.3.3 |
| apaTables | 3.0.0 |
| ape | 5.8-1 |
| archive | 1.1.12 |
| arm | 1.14-4 |
| arrayhelpers | 1.1-0 |
| AsioHeaders | 1.28.2-1 |
| askpass | 1.2.1 |
| assertthat | 0.2.1 |
| assortnet | 0.20 |
| av | 0.9.4 |
| AzureAuth | 1.3.3 |
| AzureGraph | 1.3.4 |
| AzureRMR | 2.4.4 |
| backports | 1.5.0 |
| bain | 0.2.11 |
| base64enc | 0.1-3 |
| BayesFactor | 0.9.12-4.7 |
| BayesFM | 0.1.7 |
| bayesplot | 1.12.0 |
| bayesQR | 2.4 |
| bayestestR | 0.15.2 |
| bbmle | 1.0.25.1 |
| BDgraph | 2.73 |
| bdsmatrix | 1.3-7 |
| beeswarm | 0.4.0 |
| bench | 1.1.4 |
| Bergm | 5.0.7 |
| bestglm | 0.37.3 |
| betareg | 3.2-2 |
| BFpack | 1.4.2 |
| BGGM | 2.1.5 |
| BH | 1.87.0-1 |
| BiasedUrn | 2.0.12 |
| bife | 0.7.2 |
| bigassertr | 0.1.6 |
| bigD | 0.3.1 |
| biglm | 0.9-3 |
| bigmemory | 4.6.4 |
| bigmemory.sri | 0.1.8 |
| bigparallelr | 0.3.2 |
| bigutilsr | 0.3.4 |
| bindr | 0.1.2 |
| bindrcpp | 0.2.3 |
| binom | 1.1-1.1 |
| BiocGenerics | 0.53.6 |
| BiocManager | 1.30.25 |
| BiocVersion | 3.21.1 |
| bit | 4.6.0 |
| bit64 | 4.6.0-1 |
| bitops | 1.0-9 |
| blavaan | 0.5-8 |
| blme | 1.0-6 |
| blob | 1.2.4 |
| blogdown | 1.21 |
| BMisc | 1.4.8 |
| bmp | 0.3 |
| bnlearn | 5.0.2 |
| bookdown | 0.42 |
| bootnet | 1.6 |
| BradleyTerry2 | 1.1.3 |
| brew | 1.0-10 |
| brglm | 0.7.2 |
| brglm2 | 0.9.2 |
| bridgesampling | 1.1-2 |
| brio | 1.1.5 |
| brms | 2.22.0 |
| Brobdingnag | 1.2-9 |
| broom | 1.0.8 |
| broom.helpers | 1.20.0 |
| broom.mixed | 0.2.9.6 |
| bslib | 0.9.0 |
| BWStest | 0.2.3 |
| cachem | 1.1.0 |
| cAIC4 | 1.1 |
| Cairo | 1.6-2 |
| callr | 3.7.6 |
| car | 3.1-3 |
| carData | 3.0-5 |
| cards | 0.5.1 |
| cardx | 0.2.3 |
| caret | 7.0-1 |
| carrier | 0.1.1 |
| catIrt | 0.5.1 |
| caTools | 1.18.3 |
| catR | 3.17 |
| cccp | 0.3-1 |
| cellranger | 1.1.0 |
| censReg | 0.5-38 |
| cgam | 1.23 |
| changepoint | 2.3 |
| checkmate | 2.3.2 |
| checkpoint | 1.0.2 |
| chemometrics | 1.4.4 |
| chk | 0.10.0 |
| chromote | 0.5.0 |
| chron | 2.3-62 |
| classInt | 0.4-11 |
| cleanrmd | 0.1.1 |
| cli | 3.6.4 |
| clipr | 0.8.0 |
| clock | 0.7.3 |
| clubSandwich | 0.6.0 |
| clue | 0.3-66 |
| clusterGeneration | 1.3.8 |
| cmdstanr | 0.8.0 |
| cmprsk | 2.2-12 |
| cobalt | 4.5.5 |
| cocor | 1.1-4 |
| coda | 0.19-4.1 |
| coin | 1.4-3 |
| collapse | 2.1.0 |
| colorspace | 2.1-1 |
| colourpicker | 1.3.0 |
| combinat | 0.0-8 |
| commonmark | 1.9.5 |
| CompQuadForm | 1.4.3 |
| coneproj | 1.20 |
| conf.design | 2.0.0 |
| conflicted | 1.2.0 |
| contfrac | 1.1-12 |
| corpcor | 1.6.10 |
| correlation | 0.8.7 |
| corrplot | 0.95 |
| covr | 3.6.4 |
| cowplot | 1.1.3 |
| cplm | 0.7-12.1 |
| cpm | 2.3 |
| cpp11 | 0.5.2 |
| crayon | 1.5.3 |
| crch | 1.2-2 |
| credentials | 2.0.2 |
| crossnma | 1.3.0 |
| crosstalk | 1.2.1 |
| crul | 1.5.0 |
| cubature | 2.1.1 |
| Cubist | 0.5.0 |
| curl | 6.2.2 |
| CVST | 0.2-3 |
| CVXR | 1.0-15 |
| dagitty | 0.3-4 |
| data.table | 1.17.0 |
| data.tree | 1.1.0 |
| datawizard | 1.0.2 |
| DBI | 1.2.3 |
| dbplyr | 2.5.0 |
| dbscan | 1.2.2 |
| deldir | 2.0-4 |
| dendextend | 1.19.0 |
| DEoptim | 2.2-8 |
| DEoptimR | 1.1-3-1 |
| Deriv | 4.1.6 |
| desc | 1.4.3 |
| deSolve | 1.40 |
| devtools | 2.4.5 |
| dfidx | 0.1-0 |
| dfoptim | 2023.1.0 |
| DHARMa | 0.4.7 |
| diagram | 1.6.5 |
| DiagrammeR | 1.0.11 |
| DiagrammeRsvg | 0.1 |
| dials | 1.4.0 |
| DiceDesign | 1.10 |
| dichromat | 2.0-0.1 |
| did | 2.1.2 |
| diffobj | 0.3.5 |
| digest | 0.6.37 |
| diptest | 0.77-1 |
| distill | 1.6 |
| distributional | 0.5.0 |
| dmetar | 0.1.0 |
| doBy | 4.6.26 |
| doconv | 0.3.2 |
| docopt | 0.7.2 |
| DoE.base | 1.2-4 |
| DoE.wrapper | 0.12 |
| doFuture | 1.0.2 |
| domir | 1.2.0 |
| doParallel | 1.0.17 |
| doRNG | 1.8.6.2 |
| dotCall64 | 1.2 |
| downlit | 0.4.4 |
| downloader | 0.4.1 |
| dplyr | 1.1.4 |
| drc | 3.0-1 |
| DRDID | 1.2.0 |
| dreamerr | 1.4.0 |
| DRR | 0.0.4 |
| DstarM | 0.5.0 |
| DT | 0.33 |
| dtplyr | 1.3.1 |
| dygraphs | 1.1.1.6 |
| e1071 | 1.7-16 |
| earth | 5.3.4 |
| ECOSolveR | 0.5.5 |
| effects | 4.2-2 |
| effectsize | 1.0.0 |
| effsize | 0.8.1 |
| EGAnet | 2.3.0 |
| egg | 0.4.5 |
| eigenmodel | 1.11 |
| ellipse | 0.5.0 |
| ellipsis | 0.3.2 |
| elliptic | 1.4-0 |
| emmeans | 1.11.0 |
| energy | 1.7-12 |
| enrichwith | 0.3.1 |
| epiR | 2.0.81 |
| equatags | 0.2.1 |
| ergm | 4.8.1 |
| esc | 0.5.1 |
| estimability | 1.5.1 |
| estimatr | 1.0.6 |
| evaluate | 1.0.3 |
| evd | 2.3-7.1 |
| ExpertChoice | 0.2.0 |
| expm | 1.0-0 |
| extraDistr | 1.10.0 |
| extrafont | 0.19 |
| extrafontdb | 1.0 |
| ez | 4.4-0 |
| factoextra | 1.0.7 |
| FactoMineR | 2.11 |
| fansi | 1.0.6 |
| far | 0.6-7 |
| faraway | 1.0.9 |
| farver | 2.1.2 |
| fastDummies | 1.7.5 |
| fastGHQuad | 1.0.1 |
| fastglm | 0.0.3 |
| fastICA | 1.2-7 |
| fastmap | 1.2.0 |
| fastmatch | 1.1-6 |
| fauxpas | 0.5.2 |
| fdrtool | 1.2.18 |
| feather | 0.3.5 |
| feisr | 1.3.0 |
| fields | 16.3.1 |
| filehash | 2.4-6 |
| filelock | 1.0.3 |
| fitdistrplus | 1.2-2 |
| fixest | 0.12.1 |
| flashClust | 1.01-2 |
| flexmix | 2.3-20 |
| flextable | 0.9.7 |
| float | 0.3-3 |
| flock | 0.7 |
| fmsb | 0.7.6 |
| FNN | 1.1.4.1 |
| foghorn | 1.6.0 |
| fontawesome | 0.5.3 |
| fontBitstreamVera | 0.1.1 |
| fontLiberation | 0.1.0 |
| fontquiver | 0.2.1 |
| forcats | 1.0.0 |
| foreach | 1.5.2 |
| forecast | 8.24.0 |
| formattable | 0.2.1 |
| Formula | 1.2-5 |
| formula.tools | 1.7.1 |
| fpc | 2.2-13 |
| fracdiff | 1.5-3 |
| FrF2 | 2.3-3 |
| fs | 1.6.5 |
| ftExtra | 0.6.4 |
| fungible | 2.4.4 |
| furrr | 0.3.1 |
| future | 1.40.0 |
| future.apply | 1.11.3 |
| future.callr | 0.8.2 |
| fwb | 0.3.0 |
| fxregime | 1.0-4 |
| GA | 3.2.4 |
| gam | 1.22-5 |
| gamlss | 5.4-22 |
| gamlss.data | 6.0-6 |
| gamlss.dist | 6.1-1 |
| gamm4 | 0.2-6 |
| gap | 1.6 |
| gap.datasets | 0.0.6 |
| gapminder | 1.0.0 |
| gargle | 1.5.2 |
| gbm | 2.2.2 |
| gdata | 3.0.1 |
| gdtools | 0.4.2 |
| gee | 4.13-29 |
| geepack | 1.3.12 |
| gemtc | 1.0-2 |
| generics | 0.1.3 |
| geoR | 1.9-4 |
| geosphere | 1.5-20 |
| gert | 2.1.5 |
| getPass | 0.2-4 |
| GGally | 2.2.1 |
| gganimate | 1.0.9 |
| ggdag | 0.2.13 |
| ggdist | 3.3.2 |
| ggdmc | 0.2.6.0 |
| ggeffects | 2.2.1 |
| ggExtra | 0.10.1 |
| ggforce | 0.4.2 |
| ggfortify | 0.4.17 |
| ggh4x | 0.3.0 |
| ggmcmc | 1.5.1.1 |
| GGMncv | 2.1.1 |
| GGMnonreg | 1.0.0 |
| ggnetwork | 0.5.13 |
| ggplot2 | 3.5.2 |
| ggplot2movies | 0.0.1 |
| ggpubr | 0.6.0 |
| ggraph | 2.2.1 |
| ggrepel | 0.9.6 |
| ggridges | 0.5.6 |
| ggsci | 3.2.0 |
| ggside | 0.3.1 |
| ggsignif | 0.6.4 |
| ggstats | 0.9.0 |
| ggtext | 0.1.2 |
| ggthemes | 5.1.0 |
| gh | 1.4.1 |
| gimme | 0.7-18 |
| gitcreds | 0.1.2 |
| glasso | 1.11 |
| glassoFast | 1.0.1 |
| glba | 0.2.1 |
| GLMMadaptive | 0.9-7 |
| glmmML | 1.1.7 |
| glmmTMB | 1.1.11 |
| glmnet | 4.1-8 |
| glmtoolbox | 0.1.12 |
| globals | 0.16.3 |
| glue | 1.8.0 |
| gmailr | 2.0.0 |
| gmnl | 1.1-3.2 |
| gmp | 0.7-5 |
| gnm | 1.1-5 |
| googledrive | 2.1.1 |
| googlesheets4 | 1.1.1 |
| gower | 1.0.2 |
| GPArotation | 2024.3-1 |
| GPfit | 1.0-8 |
| gplots | 3.2.0 |
| gptstudio | 0.4.0 |
| gRain | 1.4.5 |
| graph | 1.85.3 |
| graphicalVAR | 0.3.4 |
| graphlayouts | 1.2.2 |
| gRbase | 2.0.3 |
| gridBase | 0.4-7 |
| gridExtra | 2.3 |
| gridGraphics | 0.5-1 |
| gridtext | 0.1.5 |
| grpreg | 3.5.0 |
| gsl | 2.1-8 |
| gsubfn | 0.7 |
| gt | 1.0.0 |
| gtable | 0.3.6 |
| gtools | 3.9.5 |
| gtrendsR | 1.5.1 |
| gtsummary | 2.1.0 |
| hardhat | 1.4.1 |
| hash | 2.2.6.3 |
| haven | 2.5.4 |
| hBayesDM | 1.2.1 |
| here | 1.0.1 |
| hexbin | 1.28.5 |
| highr | 0.11 |
| Hmisc | 5.2-3 |
| hms | 1.1.3 |
| HSAUR3 | 1.0-15 |
| htm2txt | 2.2.2 |
| htmlTable | 2.4.3 |
| htmltools | 0.5.8.1 |
| htmlwidgets | 1.6.4 |
| httpcode | 0.3.0 |
| httptest2 | 1.1.0 |
| httpuv | 1.6.15 |
| httr | 1.4.7 |
| httr2 | 1.1.2 |
| huge | 1.3.5 |
| humaniformat | 0.6.0 |
| hunspell | 3.0.6 |
| huxtable | 5.6.0 |
| hypergeo | 1.2-14 |
| ICS | 1.4-2 |
| ICSOutlier | 0.4-0 |
| ids | 1.0.1 |
| igraph | 2.1.4 |
| imager | 1.0.3 |
| imputeTS | 3.3 |
| ini | 0.3.1 |
| inline | 0.3.21 |
| insight | 1.1.0 |
| intergraph | 2.0-4 |
| interp | 1.1-6 |
| inum | 1.0-5 |
| ipred | 0.9-15 |
| IRdisplay | 1.1 |
| irr | 0.84.1 |
| irtoys | 0.2.2 |
| IsingFit | 0.4 |
| IsingSampler | 0.2.3 |
| ISLR | 1.4 |
| isoband | 0.2.7 |
| ISOcodes | 2024.02.12 |
| iterators | 1.0.14 |
| ivreg | 0.6-5 |
| jagsUI | 1.6.2 |
| janeaustenr | 1.0.0 |
| JM | 1.5-2 |
| jomo | 2.7-6 |
| jose | 1.2.1 |
| jpaRmd | 0.5.5 |
| jpeg | 0.1-11 |
| jquerylib | 0.1.4 |
| jsonlite | 2.0.0 |
| jsonvalidate | 1.5.0 |
| jtools | 2.3.0 |
| juicyjuice | 0.1.0 |
| JuliaCall | 0.17.6 |
| JuliaConnectoR | 1.1.4 |
| kableExtra | 1.4.0 |
| katex | 1.5.0 |
| kernlab | 0.9-33 |
| keyring | 1.3.2 |
| klaR | 1.7-3 |
| knitr | 1.50 |
| ks | 1.14.3 |
| kSamples | 1.2-10 |
| kutils | 1.73 |
| labeling | 0.4.3 |
| labelled | 2.14.0 |
| labelVector | 0.1.2 |
| laeken | 0.5.3 |
| LaplacesDemon | 16.1.6 |
| lars | 1.3 |
| later | 1.4.2 |
| latex2exp | 0.9.6 |
| latticeExtra | 0.6-30 |
| lava | 1.8.1 |
| lavaan | 0.6-19 |
| lavaSearch2 | 2.0.3 |
| lazyeval | 0.2.2 |
| lda | 1.5.2 |
| LDATS | 0.3.0 |
| ldatuning | 1.0.2 |
| leaps | 3.2 |
| lfe | 3.1.1 |
| lgr | 0.4.4 |
| lhs | 1.2.0 |
| libcoin | 1.0-10 |
| lifecycle | 1.0.4 |
| linprog | 0.9-4 |
| lintr | 3.2.0 |
| lisrelToR | 0.3 |
| listenv | 0.9.1 |
| litedown | 0.7 |
| literanger | 0.1.1 |
| littler | 0.3.21 |
| lm.beta | 1.7-2 |
| lme4 | 1.1-37 |
| lmerTest | 3.1-3 |
| lmtest | 0.9-40 |
| lobstr | 1.1.2 |
| locatexec | 0.1.1 |
| logcondens | 2.1.8 |
| logger | 0.4.0 |
| logistf | 1.26.0 |
| logitr | 1.1.2 |
| logspline | 2.1.22 |
| loo | 2.8.0 |
| lpSolve | 5.6.23 |
| lpSolveAPI | 5.5.2.0-17.12 |
| lqmm | 1.5.8 |
| ltm | 1.2-0 |
| lubridate | 1.9.4 |
| magic | 1.6-1 |
| magick | 2.8.6 |
| magrittr | 2.0.3 |
| mallet | 1.3.0 |
| mapproj | 1.2.11 |
| maps | 3.4.2.1 |
| marginaleffects | 0.25.1 |
| markdown | 2.0 |
| mathjaxr | 1.6-0 |
| matrixcalc | 1.0-6 |
| MatrixExtra | 0.1.15 |
| MatrixModels | 0.5-4 |
| matrixStats | 1.5.0 |
| maxLik | 1.5-2.1 |
| mbend | 1.3.1 |
| MBESS | 4.9.3 |
| mclogit | 0.9.6 |
| mclust | 6.1.1 |
| mcmc | 0.9-8 |
| MCMCglmm | 2.36 |
| MCMCpack | 1.7-1 |
| mda | 0.5-5 |
| mded | 0.1-2 |
| MDPtoolbox | 4.0.3 |
| mediation | 4.5.0 |
| memisc | 0.99.31.8.2 |
| memoise | 2.0.1 |
| MEMSS | 0.9-3 |
| merDeriv | 0.2-4 |
| merTools | 0.6.2 |
| meta | 8.0-2 |
| metaBMA | 0.6.9 |
| metadat | 1.4-0 |
| metafor | 4.8-0 |
| metaplus | 1.0-6 |
| metaSEM | 1.5.0 |
| mfx | 1.2-2 |
| mgm | 1.2-15 |
| mi | 1.1 |
| mice | 3.17.0 |
| miceadds | 3.17-44 |
| microbenchmark | 1.5.0 |
| MIIVsem | 0.5.8 |
| mime | 0.13 |
| miniUI | 0.1.1.1 |
| minqa | 1.2.8 |
| miscTools | 0.6-28 |
| mitml | 0.4-5 |
| mitools | 2.4 |
| mlapi | 0.1.1 |
| mlbench | 2.1-6 |
| MLmetrics | 1.1.3 |
| mlmRev | 1.0-8 |
| mlogit | 1.1-1 |
| mlVAR | 0.5.2 |
| mmrm | 0.3.14 |
| mnormt | 2.1.1 |
| mockery | 0.4.4 |
| mockr | 0.2.1 |
| modelbased | 0.10.0 |
| modelenv | 0.2.0 |
| ModelMetrics | 1.2.2.2 |
| modelr | 0.1.11 |
| modeltools | 0.2-23 |
| modules | 0.13.0 |
| moments | 0.14.1 |
| MplusAutomation | 1.1.1 |
| msm | 1.8.2 |
| multcomp | 1.4-28 |
| multcompView | 0.1-10 |
| multgee | 1.9.0 |
| multicool | 1.0.1 |
| multimode | 1.5 |
| MuMIn | 1.48.11 |
| munsell | 0.5.1 |
| mvnfast | 0.2.8 |
| mvtnorm | 1.3-3 |
| nabor | 0.5.0 |
| NbClust | 3.0.1 |
| nestedLogit | 0.3.2 |
| netmeta | 3.2-0 |
| network | 1.19.0 |
| NetworkComparisonTest | 2.2.2 |
| NetworkToolbox | 1.4.2 |
| networktools | 1.6.0 |
| networktree | 1.0.1 |
| neuralnet | 1.44.2 |
| nFactors | 2.4.1.1 |
| NlcOptim | 0.6 |
| nleqslv | 3.3.5 |
| nloptr | 2.2.1 |
| NLP | 0.3-2 |
| nnls | 1.6 |
| nonnest2 | 0.5-8 |
| numbers | 0.8-5 |
| numDeriv | 2016.8-1.1 |
| OAIHarvester | 0.3-5 |
| officedown | 0.4.0 |
| officer | 0.6.8 |
| oompaBase | 3.2.10 |
| oompaData | 3.1.5 |
| opdisDownsampling | 1.0.1 |
| OpenMx | 2.21.13 |
| openssl | 2.3.2 |
| openxlsx | 4.2.8 |
| openxlsx2 | 1.14 |
| operator.tools | 1.6.3 |
| optimx | 2025-4.9 |
| ordbetareg | 0.8 |
| ordinal | 2023.12-4.1 |
| osfr | 0.2.9 |
| osqp | 0.6.3.3 |
| packrat | 0.9.2 |
| pak | 0.8.0.2 |
| pals | 1.10 |
| pamr | 1.57 |
| pan | 1.9 |
| pander | 0.6.6 |
| panelr | 0.7.8 |
| papaja | 0.1.3 |
| parallelly | 1.43.0 |
| parameters | 0.24.2 |
| parsnip | 1.3.1 |
| partitions | 1.10-7 |
| party | 1.3-18 |
| partykit | 1.2-23 |
| patchwork | 1.3.0 |
| pbapply | 1.7-2 |
| pbivnorm | 0.6.0 |
| pbkrtest | 0.5.3 |
| pbmcapply | 1.5.1 |
| pbv | 0.5-47 |
| pcaPP | 2.0-5 |
| pdftools | 3.5.0 |
| penalized | 0.9-52 |
| performance | 0.13.0 |
| phylolm | 2.6.5 |
| phyr | 1.1.0 |
| pillar | 1.10.2 |
| pingr | 2.0.5 |
| pixiedust | 0.9.4 |
| pkgbuild | 1.4.7 |
| pkgcache | 2.2.3 |
| pkgconfig | 2.0.3 |
| pkgdepends | 0.8.0 |
| pkgdown | 2.1.1 |
| pkgload | 1.4.0 |
| PKI | 0.1-14 |
| plm | 2.6-6 |
| plogr | 0.2.0 |
| plotly | 4.10.4 |
| plotmo | 3.6.4 |
| plotrix | 3.8-4 |
| pls | 2.8-5 |
| plyr | 1.8.9 |
| PMCMRplus | 1.9.12 |
| png | 0.1-8 |
| poibin | 1.6 |
| polspline | 1.1.25 |
| polyclip | 1.10-7 |
| polycor | 0.8-1 |
| polynom | 1.4-1 |
| poorman | 0.2.7 |
| posterior | 1.6.1 |
| ppcor | 1.1 |
| prabclus | 2.3-4 |
| pracma | 2.4.4 |
| praise | 1.0.0 |
| prereg | 0.6.0 |
| prettyunits | 1.2.0 |
| priorsense | 1.1.0 |
| pROC | 1.18.5 |
| processx | 3.8.6 |
| prodlim | 2024.06.25 |
| profileModel | 0.6.1 |
| profmem | 0.6.0 |
| profvis | 0.4.0 |
| progress | 1.2.3 |
| progressr | 0.15.1 |
| projpred | 2.8.0 |
| promises | 1.3.2 |
| PROreg | 1.3 |
| proto | 1.0.0 |
| proxy | 0.4-27 |
| ps | 1.9.0 |
| pscl | 1.5.9 |
| pso | 1.0.4 |
| psych | 2.5.3 |
| psycho | 0.6.1 |
| psychonetrics | 0.13 |
| psychTools | 2.5.3 |
| psyinfr | 0.2.7 |
| purrr | 1.0.4 |
| pvclust | 2.2-0 |
| pwr | 1.3-0 |
| qgam | 2.0.0 |
| qgraph | 1.9.8 |
| qpdf | 1.3.5 |
| qqconf | 1.3.2 |
| qqplotr | 0.0.6 |
| qreport | 1.0-1 |
| QRM | 0.4-35 |
| qs | 0.27.3 |
| quadprog | 1.5-8 |
| quanteda | 4.2.0 |
| quantmod | 0.4.27 |
| quantreg | 6.1 |
| questionr | 0.8.0 |
| QuickJSR | 1.7.0 |
| qvcalc | 1.0.4 |
| R.cache | 0.16.0 |
| R.matlab | 3.7.0 |
| R.methodsS3 | 1.8.2 |
| R.oo | 1.27.0 |
| R.rsp | 0.46.0 |
| R.utils | 2.13.0 |
| r2d3 | 0.2.6 |
| R6 | 2.6.1 |
| ragg | 1.4.0 |
| randomForest | 4.7-1.2 |
| randtoolbox | 2.0.5 |
| ranger | 0.17.0 |
| RANN | 2.6.2 |
| RApiSerialize | 0.1.4 |
| rappdirs | 0.3.3 |
| raster | 3.6-32 |
| RBGL | 1.83.0 |
| rbibutils | 2.3 |
| Rcereal | 1.3.2 |
| rcmdcheck | 1.4.0 |
| RColorBrewer | 1.1-3 |
| Rcpp | 1.0.14 |
| RcppArmadillo | 14.4.1-1 |
| RcppDist | 0.1.1 |
| RcppEigen | 0.3.4.0.2 |
| RcppParallel | 5.1.10 |
| RcppProgress | 0.4.2 |
| RcppTOML | 0.2.3 |
| Rcsdp | 0.1.57.5 |
| RCurl | 1.98-1.17 |
| Rdpack | 2.6.4 |
| reactable | 0.4.4 |
| reactR | 0.6.1 |
| readbitmap | 0.1.5 |
| readr | 2.1.5 |
| readxl | 1.4.5 |
| recipes | 1.2.1 |
| reformulas | 0.4.0 |
| ReinforcementLearning | 1.0.5 |
| relaimpo | 2.2-7 |
| relimp | 1.0-5 |
| rematch | 2.0.0 |
| rematch2 | 2.1.2 |
| remotes | 2.5.0 |
| rempsyc | 0.1.9 |
| renv | 1.1.4 |
| repr | 1.1.7 |
| reprex | 2.1.1 |
| reshape | 0.8.9 |
| reshape2 | 1.4.4 |
| reticulate | 1.42.0 |
| rex | 1.2.1 |
| Rfast | 2.1.5.1 |
| rgl | 1.3.18 |
| Rglpk | 0.6-5.1 |
| Rgraphviz | 2.51.9 |
| RhpcBLASctl | 0.23-42 |
| rhub | 2.0.1 |
| rintrojs | 0.3.4 |
| rio | 1.2.3 |
| rjags | 4-17 |
| rJava | 1.0-11 |
| rjson | 0.2.23 |
| rlang | 1.1.5 |
| rle | 0.9.2 |
| rlecuyer | 0.3-8 |
| rlist | 0.4.6.2 |
| RLRsim | 3.1-8 |
| rmarkdown | 2.29 |
| rmcorr | 0.7.0 |
| rmdfiltr | 0.1.5 |
| Rmpfr | 1.0-0 |
| rms | 8.0-0 |
| rngtools | 1.5.2 |
| rngWELL | 0.10-10 |
| robustbase | 0.99-4-1 |
| robustlmm | 3.3-1 |
| robvis | 0.3.0 |
| rockchalk | 1.8.157 |
| ROCR | 1.0-11 |
| rootSolve | 1.8.2.4 |
| roptim | 0.1.6 |
| ROSE | 0.0-4 |
| roxygen2 | 7.3.2 |
| roxygen2md | 1.0.1 |
| rpf | 1.0.14 |
| Rpoppler | 0.1-3 |
| rprojroot | 2.0.4 |
| rr2 | 1.1.1 |
| rsample | 1.3.0 |
| rsconnect | 1.3.4 |
| rsm | 2.10.6 |
| Rsolnp | 1.16 |
| rsparse | 0.5.3 |
| RSpectra | 0.16-2 |
| rstan | 2.32.7 |
| rstanarm | 2.32.1 |
| rstantools | 2.4.0 |
| rstatix | 0.7.2 |
| rstudioapi | 0.17.1 |
| rsvd | 1.0.5 |
| rsvg | 2.6.2 |
| rtdists | 0.11-5 |
| rtf | 0.4-14.1 |
| rticles | 0.27 |
| Rttf2pt1 | 1.3.12 |
| RUnit | 0.4.33 |
| runjags | 2.2.2-5 |
| rversions | 2.1.2 |
| rvest | 1.0.4 |
| rvg | 0.3.5 |
| RWiener | 1.3-3 |
| s2 | 1.1.7 |
| safer | 0.2.1 |
| sandwich | 3.1-1 |
| sass | 0.4.9 |
| scagnostics | 0.2-6 |
| scales | 1.3.0 |
| scatterplot3d | 0.3-44 |
| scoringRules | 1.1.3 |
| scs | 3.2.4 |
| see | 0.11.0 |
| selectr | 0.4-2 |
| sem | 3.1-16 |
| semEff | 0.7.2 |
| semPlot | 1.1.6 |
| semTools | 0.5-7 |
| serp | 0.2.5 |
| servr | 0.32 |
| sessioninfo | 1.2.3 |
| sets | 1.0-25 |
| sf | 1.0-20 |
| sfd | 0.1.0 |
| sfsmisc | 1.1-20 |
| shape | 1.4.6.1 |
| shiny | 1.10.0 |
| shiny.i18n | 0.3.0 |
| shinyjs | 2.1.0 |
| shinystan | 2.6.0 |
| shinytest2 | 0.4.0 |
| shinythemes | 1.2.0 |
| showtext | 0.9-7 |
| showtextdb | 3.0 |
| sigr | 1.1.5 |
| simex | 1.8 |
| skimr | 2.1.5 |
| skpr | 1.7.1 |
| slam | 0.1-55 |
| slider | 0.3.2 |
| sm | 2.2-6.0 |
| smacof | 2.1-7 |
| smd | 0.8.0 |
| sna | 2.8 |
| snow | 0.4-4 |
| SnowballC | 0.7.1 |
| snowfall | 1.84-6.3 |
| sodium | 1.4.0 |
| som | 0.3-5.2 |
| sourcetools | 0.1.7-1 |
| sp | 2.2-0 |
| spam | 2.11-1 |
| sparkline | 2.0 |
| SparseGrid | 0.8.2 |
| SparseM | 1.84-2 |
| sparsepca | 0.1.2 |
| sparsevctrs | 0.3.2 |
| spatstat.data | 3.1-6 |
| spatstat.geom | 3.3-6 |
| spatstat.univar | 3.1-2 |
| spatstat.utils | 3.1-3 |
| spData | 2.3.4 |
| spdep | 1.3-10 |
| speedglm | 0.3-5 |
| spelling | 2.3.1 |
| splancs | 2.01-45 |
| splines2 | 0.5.4 |
| spls | 2.2-3 |
| SQUAREM | 2021.1 |
| SSEparser | 0.1.0 |
| StanHeaders | 2.32.10 |
| stargazer | 5.2.3 |
| statmod | 1.5.0 |
| statnet.common | 4.11.0 |
| stinepack | 1.5 |
| stm | 1.3.7 |
| stopwords | 2.3 |
| stringfish | 0.16.0 |
| stringi | 1.8.7 |
| stringmagic | 1.1.2 |
| stringr | 1.5.1 |
| strucchange | 1.5-4 |
| styler | 1.10.3 |
| superpc | 1.12 |
| SuppDists | 1.1-9.9 |
| support.CEs | 0.7-0 |
| survey | 4.4-2 |
| svDialogs | 1.1.0 |
| svglite | 2.1.3 |
| svGUI | 1.0.1 |
| svUnit | 1.0.6 |
| svylme | 1.5-1 |
| sys | 3.4.3 |
| sysfonts | 0.8.9 |
| systemfonts | 1.2.2 |
| tables | 0.9.31 |
| tensorA | 0.36.2.1 |
| terra | 1.8-42 |
| tesseract | 5.2.3 |
| testit | 0.13 |
| testthat | 3.2.3 |
| texreg | 1.39.4 |
| text2vec | 0.6.4 |
| textdata | 0.4.5 |
| textmineR | 3.0.5 |
| textshaping | 1.0.0 |
| TH.data | 1.1-3 |
| themis | 1.0.3 |
| threejs | 0.3.3 |
| tibble | 3.2.1 |
| tictoc | 1.2.1 |
| tidybayes | 3.0.7 |
| tidygraph | 1.3.1 |
| tidyr | 1.3.1 |
| tidyselect | 1.2.1 |
| tidytext | 0.4.2 |
| tidyverse | 2.0.0 |
| tiff | 0.1-12 |
| timechange | 0.3.0 |
| timeDate | 4041.110 |
| timeSeries | 4041.111 |
| tinylabels | 0.2.5 |
| tinytable | 0.8.0 |
| tinytest | 1.4.1 |
| tinytex | 0.56 |
| tm | 0.7-16 |
| TMB | 1.9.17 |
| tmvnsim | 1.0-2 |
| tokenizers | 0.3.0 |
| topicmodels | 0.2-17 |
| transformr | 0.1.5 |
| triebeard | 0.4.1 |
| truncdist | 1.0-2 |
| truncnorm | 1.0-9 |
| truncreg | 0.2-5 |
| trust | 0.1-8 |
| tseries | 0.10-58 |
| TTR | 0.24.4 |
| tufte | 0.13 |
| tune | 1.3.0 |
| tweedie | 2.3.5 |
| tweenr | 2.0.3 |
| twosamples | 2.0.1 |
| tzdb | 0.5.0 |
| ucminf | 1.2.2 |
| udpipe | 0.8.11 |
| units | 0.8-7 |
| unix | 1.5.9 |
| urca | 1.3-4 |
| urlchecker | 1.0.1 |
| urltools | 1.7.3 |
| usethis | 3.1.0 |
| utf8 | 1.2.4 |
| uuid | 1.2-1 |
| V8 | 6.0.3 |
| VCA | 1.5.1 |
| vcd | 1.4-13 |
| vcr | 1.7.0 |
| vctrs | 0.6.5 |
| vdiffr | 1.0.8 |
| VGAM | 1.1-13 |
| VIM | 6.2.2 |
| vioplot | 0.5.1 |
| viridis | 0.6.5 |
| viridisLite | 0.4.2 |
| visNetwork | 2.1.2 |
| vroom | 1.6.5 |
| waiter | 0.2.5 |
| waldo | 0.6.1 |
| warp | 0.2.1 |
| wdm | 0.2.6 |
| webfakes | 1.3.2 |
| webmockr | 2.0.0 |
| webp | 1.3.0 |
| webshot | 0.5.5 |
| webshot2 | 0.1.1 |
| websocket | 1.4.4 |
| WeightIt | 1.4.0 |
| weights | 1.0.4 |
| whisker | 0.4.1 |
| whoami | 1.3.0 |
| withr | 3.0.2 |
| wk | 0.9.4 |
| wordcloud | 2.6 |
| workflows | 1.2.0 |
| wrapr | 2.1.0 |
| writexl | 1.5.3 |
| WRS2 | 1.1-6 |
| xaringan | 0.30 |
| xaringanthemer | 0.4.3 |
| xfun | 0.52 |
| XML | 3.99-0.18 |
| xml2 | 1.3.8 |
| xmlparsedata | 1.0.5 |
| xopen | 1.0.1 |
| xslt | 1.5.1 |
| xtable | 1.8-4 |
| xts | 0.14.1 |
| yaml | 2.3.10 |
| yardstick | 1.3.2 |
| zigg | 0.0.2 |
| zip | 2.3.2 |
| zoo | 1.8-14 |