ZAPP Atlas

API for the ZAPP zebrafish toxicology atlas.

FastAPI server backed by the LinkML-generated zebrafish-toxicology-atlas-schema. The previous Flask upload endpoint and the first-pass React/Vite UI are archived under legacy/; neither is wired into the current build.

just install
just build-client
just dev-api           # http://localhost:8000

That serves everything: the HTML pages at /, the JSON API at /api, and the React editing client at /edit.

To work on the React client with hot reloading, run just dev-client in one terminal and just dev-api-hmr in another, then open http://localhost:8000/edit/ — the page comes from FastAPI, not from Vite.

just test runs the pytest suite. just seed reseeds the dev DB (seeding also runs automatically on FastAPI startup unless ZAPP_SKIP_SEED=1).

See ARCHITECTURE.md for how the two surfaces fit together, how the LinkML schema drives both, and how to sign in locally without ORCID credentials.

• Fly.io — fly deploy (uses the top-level Dockerfile + fly.toml).
• GCP Cloud Run — just gcp-ship builds, pushes, and deploys with a GCS-backed volume for the SQLite DB.