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Toolkit for alphafold3 input and output files

Python 103 12 Updated Jun 15, 2026

A command-line tool for tweaking WeChat - 首款微信 macOS 客户端撤回拦截与多开 🔨

Swift 13,743 1,643 Updated Feb 8, 2026

An agentic skills framework & software development methodology that works.

Shell 236,497 20,989 Updated Jun 23, 2026

A terminal spreadsheet multitool for discovering and arranging data

Python 9,144 351 Updated Jun 23, 2026

Powerful system-level package manager for Linux, macOS and Windows written in Rust – building on top of the Conda ecosystem.

Rust 7,320 532 Updated Jun 23, 2026

It's a package for evaluation of predicted poses, right?

Python 77 9 Updated Mar 27, 2026

Portable command-line tool to query bioinformatics APIs, data, databases and files.

Go 93 21 Updated Feb 23, 2023

Source code accompanying the 'MF-PCBA: Multi-fidelity high-throughput screening benchmarks for drug discovery and machine learning' paper

Python 32 7 Updated Jul 29, 2025

Multi-modal Molecule Structure-text Model for Text-based Editing and Retrieval, Nat Mach Intell 2023 (https://www.nature.com/articles/s42256-023-00759-6)

Python 256 24 Updated Jun 27, 2025

👜 Easily pick a place to store data for your Python code.

Python 42 6 Updated Jun 19, 2026

⚗️ An all-in-one solution for chemical property retrieval from PubChem.

Python 50 4 Updated May 29, 2026

Python wrapper for the PubChem PUG REST API.

Python 504 121 Updated Sep 8, 2025

🤖 A Python library for learning and evaluating knowledge graph embeddings

Python 2,010 221 Updated Jun 14, 2026

Write reproducible code for getting and processing ChEMBL

Jupyter Notebook 92 14 Updated Sep 14, 2025

Structural Quality Assessment for Biomolecular Structure Prediction Models

Python 97 9 Updated May 22, 2026

The Family of Diffusion Protein Language Models (DPLM)

Python 339 49 Updated Jul 25, 2025

HMMER: biological sequence analysis using profile HMMs

C 415 92 Updated May 30, 2026

An MCP-based chatbot | 一个基于MCP的聊天机器人

C++ 27,532 6,167 Updated Jun 18, 2026

RWKV centralised docs for the community

34 10 Updated Jan 17, 2026

PoseX: A Molecular Docking Benchmark

Python 80 4 Updated Mar 23, 2026

Learning the language of protein-protein interactions

Python 150 19 Updated Jun 15, 2026
Python 61 14 Updated Mar 18, 2025

The first 100B protein language model from biomap

25 4 Updated Mar 17, 2025

An accurate and trainable end-to-end protein-ligand docking framework

C++ 138 15 Updated Mar 24, 2025

SIU: A Million-Scale Structural Small Molecule-Protein Interaction Dataset for Unbiased Bioactivity Prediction

Python 17 1 Updated Feb 17, 2025

The Chemical Data Processing Toolkit

C++ 123 18 Updated Jun 22, 2026

An Open-Source Molecular Builder and Free Energy Preparation Workflow

Jupyter Notebook 143 25 Updated Nov 10, 2025
Python 58 4 Updated Dec 15, 2025
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