Free-Text Promptable Universal 3D Medical Image Segmentation

Fast Numpy I/O : Fast replacement for numpy.load and numpy.save

Python bit pack/unpack package.

Faster C implementation of the bitstruct Python library

CUDA-accelerated texture memory 3D affine transformations with numpy/cupy

N-dimensional linear interpolation on a rectangular grid in C++

Library for multivariate function approximation with splines (B-spline, P-spline, and more) with interfaces to C++, C, Python and MATLAB

Lightweight, multithreaded, MEX-aware C++ header-only template library for parallel calculation of linear, bilinear, and trilinear interpolation.

An ITK module to read and write High-throughput JPEG2000 (HTJ2K) images.

Image transformation, compression, and decompression codecs.

A curated list of awesome resources, papers, datasets, and tools related to AI in radiology. This repository aims to provide a comprehensive collection of materials to facilitate research, learning…

Python implementation of the STAPLE segmentation algorithm

Eve Atlas used for segmentations

MRI brain extraction tool

MRI brain extraction tool

A python module for scientific analysis of 3D data based on VTK and Numpy

Promtless-TaskSpecific-Finetuning of MetaAI Segment-Anything Model

A high-performance library for compressed ND arrays and columnar tables, with compute and indexing engines

3 dimensional spatial transformations

Segment Anything Model for Medical Image Segmentation: Open-Source Project Summary

From Claims to Evidence: A Unified Framework and Critical Analysis of CNN vs. Transformer vs. Mamba in Medical Image Segmentation.

Brain Lesion Analysis and Segmentation Tool for Computed Tomography

Tool for robust segmentation of >100 important anatomical structures in CT and MR images

[MICCAI 2023] MedNeXt is a fully ConvNeXt architecture for 3D medical image segmentation.

A lightweight adapter bridges SAM with medical imaging [MedIA]

The repository provides code for running inference with the Meta Segment Anything Model 2 (SAM 2), links for downloading the trained model checkpoints, and example notebooks that show how to use th…

Segment Anything in Medical Images