Commits

History for

Commits on Mar 25, 2018

avoided creating a dummy graph just to get minia parameters
rchikhi
committed
4b0669b

Commits on Jul 5, 2017

parameterized covmult in bulges (the 1.1)
rchikhi
committed
8351461

Commits on Jul 3, 2017

changed the format of output contigs FASTA header, now identical to BCALM, and can be converted to GFA
rchikhi
committed
6136326

Commits on Jun 29, 2017

explanations of simplifications parameters
rchikhi
committed
663d34b
exposing all graph simplifications parameters
rchikhi
committed
51b0f16

Commits on Dec 8, 2016

added command line flags to make graph simplifications optional
rchikhi
committed
ee00a34

Commits on Nov 25, 2016

added undocumented env variable MINIA_OUT_TMP to avoid specifying -out-tmp everytime
rchikhi
committed
e5c2469

Commits on Aug 17, 2016

spring cleanup of Minia's source code, now it contains only the parts needed to work with GraphUnitigs
rchikhi
committed
517d3a0

Commits on Aug 9, 2016

added contigs_to_fastg from MEGAHIT,
rchikhi
committed
61d616a

Commits on Aug 2, 2016

added git version in executable
rchikhi
committed
31da63e

Commits on Jul 31, 2016

adapted minia to graphunitigs, traversing unitigs to assemble
rchikhi
committed
9d524e6

Commits on Jul 25, 2016

towards GraphUnitigs! commit coupled with the big gatb-core july commit
rchikhi
committed
fe8d9a7

Commits on Jun 2, 2016

graph isn't const due to non-simple node caching
rchikhi
committed
4d5fef3

Commits on May 26, 2016

reverted to original debloom for k>128
rchikhi
committed
f274c8b

Commits on Mar 7, 2016

minia valgrind error uninitialized var
rizkg
committed
16cbe7c

Commits on Feb 18, 2016

minor
rchikhi
committed
26e3835

Commits on Dec 16, 2015

Commits on Nov 11, 2015

some timing
rchikhi
committed
083a805

Commits on Nov 8, 2015

companion commit to the big gatb-core commit. compatibility of tools with new gatb-core
rchikhi
committed
d3ebfe3

Commits on Sep 28, 2015

immediate simplification optimizations
rchikhi
committed
c1f1563
minor
rchikhi
committed
f507427

Commits on Sep 25, 2015

rctc 4 for EC seems a better compromise n50/misassemblies than 2, for arabido at least
Rayan
committed
83d7c8f

Commits on Sep 15, 2015

minor fixes
rchikhi
committed
0ffb565
minor but essential fixes
rchikhi
committed
93ab8d3

Commits on Sep 14, 2015

tweaks for graph simpl runs
Rayan
committed
b70be64
minor
rchikhi
committed
1971c24
minor update
rchikhi
committed
439791d
implemented EC removal for minia
rchikhi
committed
37b1f9c

Commits on Sep 12, 2015

in the process of implementing EC removal. some code and test cleanup
rchikhi
committed
2862321

Commits on Aug 22, 2015

fixed segfault during bulge removal (when a tip is still present)
rchikhi
committed
f7bedd6

Commits on Aug 13, 2015

removed -graph parameter for minia now that -in has this same functionality (and even extended)
rchikhi
committed
1db17eb

Commits on Jun 2, 2015

fixed crash when mphf=none
rchikhi
committed
bfa5f05

Commits on May 20, 2015

allow double-tips to be removed (those with nothing in but many out)
rchikhi
committed
ae2580d

Commits on May 19, 2015

not-so-clean code for showing how bulge traversal fails: mostly too complex paths, not surprising
rchikhi
committed
89ccc6d