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dbmi-bgm / granite
Forked from bgm-cwg/novoCallerA collection of software to work with genomic variants
This is an extension of Tibanna that integrates with 4DN/CGAP/SMaHT data portals.
Lightweight converter between hic and cool contact matrices.
Providing insight into your application using AWS infrastructure.
Interactive visualizations for differential expression
Django app that manages the creation of, and proxies requests to, Docker containers.
Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ …
Save and load your R sessions faster using parallel compression
Common Workflow Language reference implementation
Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊
1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates
Pipelines developed and used by 4DN-DCIC in Common Workflow Language
R binder for pairix - 2D/1D genomic indexing and querying on bgzipped text file
Graph and network visualization using tabular data in R
R Package for accessing and plotting Google Maps
Create timecourse "fish plots" that show changes in the clonal architecture of tumors
Seven Bridges Genomics aligner/caller debugging and analysis tools
Seven Bridges API Client, CWL Schema, Meta Schema, and SDK Helper in R
An integrated shell for working with the AWS CLI.
Docker source file for duplexa/gatk_env:v1 on hub.docker.com
Data portal for submitting and viewing genomic data
Software program for checking sample matching for NGS data
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
The Refinery Platform is a data management, analysis and visualization system for bioinformatics and computational biology applications. The platforms consists of three major components: a data rep…
Nozzle is a report generation toolkit for data analysis pipelines implemented in R.