Topology-Aware Losses for 3D Neuron Segmentation

Master thesis project

Based on BANIS

Name		Name	Last commit message	Last commit date
Latest commit History 42 Commits
data_transformations		data_transformations
evaluation		evaluation
segmentation		segmentation
skeletonization		skeletonization
visualization		visualization
.gitignore		.gitignore
BANIS.py		BANIS.py
README.md		README.md
aff_train.sh		aff_train.sh
aff_train_distributed.sh		aff_train_distributed.sh
banis_betti3D.py		banis_betti3D.py
banis_bettiMulticlass.py		banis_bettiMulticlass.py
banis_bettiParallel.py		banis_bettiParallel.py
banis_clDice.py		banis_clDice.py
banis_malis.py		banis_malis.py
banis_skeletonRecall.py		banis_skeletonRecall.py
bettiParallel.sh		bettiParallel.sh
config.yaml		config.yaml
dask_test_debug.py		dask_test_debug.py
dask_test_debug2.py		dask_test_debug2.py
data.py		data.py
environment.yaml		environment.yaml
gaussian_affinities.py		gaussian_affinities.py
inference.py		inference.py
inference_disc.py		inference_disc.py
inference_distributed.py		inference_distributed.py
inference_test.py		inference_test.py
malis.sh		malis.sh
metrics.py		metrics.py
resubmit_slurm.py		resubmit_slurm.py
show_data.py		show_data.py
slurm_job_scheduler.py		slurm_job_scheduler.py
test_cldice.py		test_cldice.py
tryin.sh		tryin.sh
validation_watcher.py		validation_watcher.py
validation_watcher.sh		validation_watcher.sh

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