`dev` -> `main` for 4.1.0 (#4429)

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patch -> main for 4.0.3 (#4415)

dev -> main for 4.0.2 (#4255)

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Merge pull request #4247 from nf-core/dev

Merge pull request #4225 from nf-core/dev

Merge pull request #4015 from nf-core/dev

Merge pull request #3919 from nf-core/dev

Merge pull request #3872 from nf-core/dev

Merge pull request #3838 from nf-core/dev

Merge pull request #3833 from nf-core/dev

dev > main for 3.4.0 release