A reactive notebook for Python — run reproducible experiments, query with SQL, execute as a script, deploy as an app, and version with git. Stored as pure Python. All in a modern, AI-native editor.

Explore genomes in the terminal. Light, blazing fast 🚀, vim-motion.

A simple Snakemake profile for Slurm without --cluster-config

My tools for the Slurm HPC workload manager

Successor of bwa-mem for short-read alignment

Aligns short reads using dynamic seed size with strobemers

GPU Acceleration of Short Read Alignment for Heterogeneous Multicore Platforms

Cotabby is local AI autocomplete for your entire Mac. Open source. On device. Everywhere you type.

An open-source Cotypist with macOS system wide AI autocomplete

An agentic skills framework & software development methodology that works.

⚙️ A curated list of static analysis (SAST) tools and linters for all programming languages, config files, build tools, and more. The focus is on tools which improve code quality.

Open-source AI job search: scan job portals, evaluate listings with a structured A-F rubric into a 1.0-5.0 score, tailor your CV, track applications — runs locally in your AI coding CLI (Claude Cod…

Self-hosted bookmark manager that is designed be to be minimal, fast, and easy to set up using Docker.

Community-contributed instructions, agents, skills, and configurations to help you make the most of GitHub Copilot.

🌳 Git worktree manager with fuzzy finder - Work on multiple branches simultaneously, perfect for parallel AI coding workflows 🍋

Remote repository management made easy

R package for analysing single cell data

A collection of awesome markdown editors & (pre)viewers for Linux, Apple OS X, Microsoft Windows, the World Wide Web & more

A curated list of data science & AI guided projects to start building your portfolio

An Electron DevTools Extension

Windows inside a Docker container.

Sam Abbott's Curriculum Vitae

Cookiecutter template for MCP server development with FastMCP

A list of Free Software network services and web applications which can be hosted on your own servers

An open-source AI agent that brings the power of Gemini directly into your terminal.

Applying polygenic scores (PGS) on imputed genotypes

Building a Cell-Ranger-compatible pre-mRNA reference package for snRNA-seq

Write Markdown with code assist and intelligence in the comfort of your favourite editor.