Framework for Creating Pipeline Software

Comparisons of multiple different prophage predictions

Reorients assembled microbial sequences

Quantum computing "Hello World", using a letter search with Grover's algorithm and Qiskit.

Analysis and visualization tools for plasmids

MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies

Lecture on viral phylodynamics

Snakemake workflow for bacterial genome assembly + polishing for Oxford Nanopore (ONT) sequencing using multiple tools.

Modern C book club for R contributors

classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF

Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.

DevSecOps Project using git, GitHub, jenkins, Maven,Junit, SonarQube, Docker, Trivy, Hashicorp Vault, AWS, Kubernetes

alternative splicing analysis pipeline

A pipeline for Bacterial Whole genome sequence data analysis

Project 2 Resources

aggregation of scholarly publications and extracted knowledge on viruses and epidemics.

Extracts genes using a list of locus tags from .gbk to logically named nucleotide .fasta's.

RNAseq analysis notes from Ming Tang

GUI/CommandLine Tool Box for biologistists to utilize NGS data.

LIMS in development to be used in NGS facility

🔥🐦🔥PHoeNIx: a platform agnostic pipeline for healthcare-associated and antimicrobial resistant pathogens

GENes Indentification with Abricate for Lucky biologists

Now stored here:

Resources for independent developers to make money

Automatically commit all edits to a wip branch with ChatGPT commit messages