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a set of SKILLS.md for doing bioinformatics with agents like claude code

Python 1,185 196 Updated Aug 11, 2026

CoEvolve: Training LLM Agents via Agent-Data Mutual Evolution

21 Updated Apr 27, 2026

Fully autonomous & self-evolving research from idea to paper. Chat an Idea. Get a Paper. 🦞

Python 14,029 1,639 Updated Jul 13, 2026

A programming framework for agentic AI

Python 60,429 9,108 Updated Apr 15, 2026

The AI Scientist: Towards Fully Automated Open-Ended Scientific Discovery 🧑‍🔬

Jupyter Notebook 14,393 2,038 Updated Dec 19, 2025

AI agents running research on single-GPU nanochat training automatically

Python 93,880 13,307 Updated Mar 26, 2026

Research artifacts from Hyra (/ˈhaɪ.rɑː/)

Python 127 7 Updated Jul 31, 2026

Agentic RL最详细入门

HTML 275 15 Updated Aug 6, 2026

A project implementing various agentic RL based on the Slime post-training framework

Python 517 36 Updated Apr 11, 2026

Biomni: a general-purpose biomedical AI agent

Python 3,703 674 Updated Aug 10, 2026

Harness + per-model results for evaluating the omicos agent on phylobio/BiomniBench-DA. 50 tasks × 7 models, 6-dimension capability radar, cost analysis. omicos runtime source: github.com/omicverse…

Python 12 3 Updated May 29, 2026

MedCTA: A Benchmark for Clinical Tool Agents

Python 5 1 Updated Jun 11, 2026

The benchmark tasks and evaluation harness for "PhysicianBench: Evaluating LLM Agents in Real-World EHR Environments".

Python 52 4 Updated Aug 13, 2026

SkillRL: Evolving Agents via Recursive Skill-Augmented Reinforcement Learning

Python 938 72 Updated May 17, 2026

Qlib is an AI-oriented Quant investment platform that aims to use AI tech to empower Quant Research, from exploring ideas to implementing productions. Qlib supports diverse ML modeling paradigms, i…

Python 47,425 7,531 Updated Jul 23, 2026

FinRL®: Financial Reinforcement Learning. 🔥

Jupyter Notebook 16,014 3,465 Updated Jul 13, 2026

One Discrete Word for Visual Reasoning Overtakes Agentic and Latent Methods

Python 138 Updated Jun 9, 2026

Automatically find issues in image datasets and practice data-centric computer vision.

Python 1,197 83 Updated Jan 8, 2026

[EMNLP2025] LightRAG: Simple and Fast Retrieval-Augmented Generation

Python 38,878 5,467 Updated Aug 15, 2026

Insightful Tutorials and Papers about Knowledge Graphs

1,068 138 Updated Aug 14, 2026

An AI Hedge Fund Team

Python 62,857 11,059 Updated Aug 7, 2026

Helixent is a small library for building ReAct-style AI agent loops based on the Bun stack.

TypeScript 646 104 Updated May 21, 2026

拼好RAG:手搓并融合了GraphRAG、LightRAG、Neo4j-llm-graph-builder进行知识图谱构建以及搜索;整合DeepSearch技术实现私域RAG的推理;自制针对GraphRAG的评估框架| Integrate GraphRAG, LightRAG, and Neo4j-llm-graph-builder for knowledge graph construct…

Python 2,317 319 Updated Nov 5, 2025

MedReason: Eliciting Factual Medical Reasoning Steps in LLMs via Knowledge Graphs

Python 282 23 Updated Jun 19, 2025

[ICLR 2026] The official repository for paper "ThinkMorph: Emergent Properties in Multimodal Interleaved Chain-of-Thought Reasoning"

Jupyter Notebook 192 17 Updated May 1, 2026

Implement a ChatGPT-like LLM in PyTorch from scratch, step by step

Jupyter Notebook 102,694 15,742 Updated Aug 10, 2026

KAG is a logical form-guided reasoning and retrieval framework based on OpenSPG engine and LLMs. It is used to build logical reasoning and factual Q&A solutions for professional domain knowledge ba…

Python 8,980 705 Updated Jan 28, 2026

A powerful tool for creating datasets for LLM fine-tuning 、RAG and Eval

JavaScript 14,789 1,523 Updated May 1, 2026
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