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feature_and_mutation_by_sample

bug

Status: Open.

#20 In blachlylab/mucor;

· pkhoueiry opened on Jul 18, 2017

Add input function for databases

enhancement

Status: Open.

#19 In blachlylab/mucor;

· jblachly opened on Feb 22, 2017

·  

2.0

Exchange HTSeq VCF reader for PyVCF

enhancement

Status: Open.

#18 In blachlylab/mucor;

· jblachly opened on Feb 22, 2017

·  

2.0

Use the ANNfield module for SnpEFF/Annovar ANN= field parsing

enhancement

Status: Open.

#17 In blachlylab/mucor;

· jblachly opened on Feb 22, 2017

·  

2.0

Support cloud/remote service based database id lookup

enhancement

Status: Open.

#16 In blachlylab/mucor;

· jblachly opened on Feb 22, 2017

·  

2.0

Move to python 3

enhancement

Status: Open.

#15 In blachlylab/mucor;

· jblachly opened on Feb 22, 2017

·  

2.0

Refactor

enhancement

Status: Open.

#14 In blachlylab/mucor;

· kwkroll32 opened on Feb 18, 2017

Pandas.DataFrame.to_csv() unexpected argument sparsify

bug

Status: Open.

#12 In blachlylab/mucor;

· kwkroll32 opened on Feb 4, 2017

FEATURE REQUEST: support for varscan txt output

enhancement

Status: Open.

#11 In blachlylab/mucor;

· die4live opened on Oct 29, 2016

snpEFF effects should not be re-ordered

enhancement

Status: Open.

#10 In blachlylab/mucor;

· jblachly opened on Apr 26, 2016

count / freq includes all non-zero depths even if no "ALT" reads

bug

Status: Open.

#9 In blachlylab/mucor;

· jblachly opened on Apr 26, 2016

Galaxy wrapper

enhancement

Status: Open.

#8 In blachlylab/mucor;

· jblachly opened on Feb 12, 2016