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Starred repositories

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napari: a fast, interactive, multi-dimensional image viewer for python

Python 2,676 507 Updated Jun 19, 2026

Neovim fugitive style git blame plugin

Lua 448 38 Updated Feb 12, 2026

A completion plugin for neovim coded in Lua.

Lua 9,458 437 Updated Mar 25, 2026

Portable package manager for Neovim that runs everywhere Neovim runs. Easily install and manage LSP servers, DAP servers, linters, and formatters.

Lua 10,336 337 Updated Jun 19, 2026

Find, Filter, Preview, Pick. All lua, all the time.

Lua 19,555 959 Updated Jun 16, 2026

💤 A modern plugin manager for Neovim

Lua 21,146 575 Updated Dec 17, 2025

An incremental parsing system for programming tools

Rust 25,918 2,712 Updated Jun 18, 2026

Nvim Treesitter configurations and abstraction layer

Tree-sitter Query 13,972 1,424 Updated Apr 3, 2026

Removes large or troublesome blobs like git-filter-branch does, but faster. And written in Scala

Scala 12,142 580 Updated Jan 19, 2025

Chai-1, SOTA model for biomolecular structure prediction

Python 1,954 276 Updated Apr 11, 2026

Mummer alignment tool

C++ 563 115 Updated Feb 4, 2025

RNA-seq aligner

C 2,210 549 Updated Mar 18, 2025

Reads simulator

C 285 92 Updated Sep 3, 2021

Align proteins to genomes with splicing and frameshift

C 405 24 Updated Jan 5, 2026

Automatically exported from code.google.com/p/figtree

Java 476 116 Updated May 17, 2026

An extremely fast Python package and project manager, written in Rust.

Rust 86,585 3,225 Updated Jun 20, 2026

HMMER: biological sequence analysis using profile HMMs

C 415 92 Updated May 30, 2026

Python 3 library with good support for both reading and writing VCF

Python 112 24 Updated Oct 2, 2025

A Variant Call Format reader for Python.

Python 419 196 Updated Sep 22, 2023

a simple template to write your CV in a readable markdown file and use CSS to publish/print it.

CSS 1,486 3,342 Updated Jun 27, 2024

A "batteries-included" distribution of ImageJ 🔋

Shell 983 257 Updated Jun 15, 2026

Genome-scale protein function classification

Java 383 75 Updated Jun 11, 2026

Tigerfish

HTML 13 2 Updated Jan 30, 2024

Genome-scale design tool for oligo hybridization probes

Python 72 26 Updated May 19, 2021

🌈Rainbow CSV - Vim plugin: Highlight columns in CSV and TSV files and run queries in SQL-like language

Python 712 28 Updated Oct 4, 2025

Accurate sample inference from amplicon data with single nucleotide resolution

R 552 168 Updated Feb 13, 2026

TEtrimmer: a novel tool to automate manual curation of transposable elements

Python 114 5 Updated May 19, 2026

Toolkit for evolutionary analyses of linkage groups

Python 34 3 Updated Jul 17, 2024

Find, circularise and annotate mitogenome from PacBio assemblies

Python 197 33 Updated May 11, 2025

Synteny and Rearrangement Identifier

Cython 473 46 Updated Jun 20, 2026
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