DeepSeek Harness: Everything is a Plugin.

A high-performance parallel SSH command execution tool for cluster management

Sequence Alignment With Duplications

符合nature论文学术表达和科研绘图的Skill

Refactoring the BroCOLI code using Rust

Bento, the office suite that fits in a file

Faithful, memory-safe, SIMD-accelerated native-Rust reimplementation of the spoa partial order alignment library

An extremely fast, high quality, non-cryptographic hash function. Platform independent compile-time and run-time hashing in rust.

Successor of bwa-mem for short-read alignment

Long read based human genomic structural variation detection with cuteSV

This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.

BAM/SAM/CRAM/FASTA reader, pileup engine, BCF/BAM writing

Chinese traditional colors

Techniques and numbers for estimating system's performance from first-principles

An online portal for exploring tandem repeats (TRs) genome-wide.

Tearing through FASTA/Q sequences

Fast, parallel Rust implementation of Prodigal for prokaryotic gene prediction in microbial genomes

Cargo subcommand to build multiple versions of the same binary, each with a different CPU features set, merged into a single portable optimized binary

SIMD-accelerated radix sort for primitive types in pure Rust

Adapter for writing Martian stages in Rust

Fast on-disk representations for temporary biological data. Don't put it in the minus-80—just put it on dry ice!

Trinity RNA-Seq de novo transcriptome assembly

a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

Download FASTQ files from SRA or ENA repositories.

LongcallD: joint calling and phasing of small, structural and mosaic variants from long reads

A zlib implementation in rust available as a C dynamic library and as a rust crate

Ultra-fast preprocessing and quality control for long-read sequencing data

A modern static site generator by the Material for MkDocs team

coredumpy saves your crash site for post-mortem debugging