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mouse_fullStack_annotations

Python 14 Updated Jun 29, 2023

A repository containing all code for the HNSCC paper.

Jupyter Notebook 2 Updated May 21, 2026

Python tool for converting files and office documents to Markdown.

Python 173,918 12,702 Updated Jul 29, 2026

Teams-first Multi-agent orchestration for Claude Code

TypeScript 38,576 3,464 Updated Aug 15, 2026

The agent harness performance optimization system. Skills, instincts, memory, security, and research-first development for Claude Code, Codex, Opencode, Cursor and beyond.

JavaScript 240,292 36,463 Updated Aug 15, 2026

This guide is designed for OpenClaw itself (Agent-facing), not as a traditional human-only hardening checklist.

Shell 2,856 196 Updated Apr 6, 2026

upload big files to Zenodo using cURL, jq and bash

Shell 351 49 Updated Feb 6, 2025

The complete sequence of a human genome

1,052 103 Updated Jul 3, 2026

CRAGR_v2 is a CRAGR pipeline that handles hotspots calling for multiple replicates using the irreproducible discovery rate (IDR).

R 3 Updated Mar 18, 2025

A repository containing any relevant code for the MS paper.

Jupyter Notebook 2 Updated Jul 21, 2026

FinaleToolkit is a package and standalone program to extract fragmentation features of cell-free DNA from paired-end sequencing data.

Python 41 17 Updated Aug 10, 2026
Python 3 1 Updated Mar 15, 2024
Python 55 22 Updated Jan 4, 2023

tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies

Python 196 58 Updated Apr 19, 2026
Java 17 4 Updated May 25, 2026

1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates

C 94 15 Updated Jan 28, 2025
JavaScript 3 1 Updated Jan 3, 2024

De novo characterization of cell-free DNA fragmentation hotspots

MATLAB 7 4 Updated Aug 21, 2021

R package for CRAG

R 12 5 Updated Feb 17, 2025

Foreign Contamination Screening caller scripts and documentation

172 23 Updated Mar 18, 2025

An easy-to-use, flexible website template for labs. https://doi.org/10.5281/zenodo.17228741

HTML 568 443 Updated Aug 3, 2026

Fast and native toolsuite for BED file manipulation

HTML 3 6 Updated Jun 25, 2022

A list of deep learning implementations in biology

2,155 489 Updated Aug 3, 2026

Model zoo for genomics

Python 175 59 Updated Dec 17, 2025

A collection of tools for Hi-C data analysis

Python 651 137 Updated Jul 18, 2026

Fast, integrative fine mapping with functional data

C++ 64 22 Updated Aug 22, 2019

Python初学者(零基础学习Python、Python入门)书籍、视频、资料、社区推荐

6,298 1,387 Updated Jan 14, 2019

Make Complex Heatmaps

R 1,531 249 Updated Apr 2, 2026

A curated list of awesome deep learning applications in the field of computational biology

1,988 313 Updated Nov 7, 2021
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