turns your codebase into an autoresearch loop — discovers what to measure, instruments the benchmark, then runs tree search with parallel subagents.

CellTRIP, Inferring virtual cell environments using multi-agent reinforcement learning for spatiotemporal trajectory interpolation, imputation, and perturbation

Repository for SIGGRAPH 2025 Poster "Train Once, Generate Anywhere: Discretization Agnostic Neural Cellular Automata using SPH Method"

MultiCell: geometric learning in multicellular development

Puffing up reinforcement learning

Allows to retrieve information about an AnnData object via MCP

A bibliometrics tool for publication metadata (pubmed, arxiv, medrxiv, biorxiv, chemrxiv) and citation analyses

Convert AI Skills (Claude Skills format) to MCP server resources - Part of BioContextAI

Cookiecutter template for MCP server development with FastMCP

The BioContextAI Registry for biomedical MCP servers

A Python package for unsupervised analysis of spatial (prote)omics data.

LLM-powered personalized daily lists of scientific papers

BioContextAI Knowledgebase MCP server for biomedical agentic AI

Robin: A multi-agent system for automating scientific discovery

Build Real-Time Knowledge Graphs for AI Agents

Tissue reassembly with generative AI

Geometric Vector Perceptrons --- a rotation-equivariant GNN for learning from biomolecular structure

ICML2024: Equivariant Graph Neural Operator for Modeling 3D Dynamics

Pipeline to predict off-target binding via probe sequences

Official implementation of E(n)-equivariant Graph Neural Cellular Automata

A cookiecutter template for Snakemake workflows

Arc Virtual Cell Atlas

The simplest, fastest repository for training/finetuning medium-sized GPTs.

Cell tracking and segmentation software