Gallery of visualizations in computational mechanics.

Scientific Inkscape: Inkscape extensions for figure resizing and editing

[Nature Communications 2025] Official repository for "Glioma Radiotherapy Design by Optimization of a Data and Physics Informed Discrete Loss"

OncoFEM is a software tool to perform numerical simulations of tumours based on medical image data, providing a possible tumour evolution.

Group syllabus

Digital Twins for Computational Oncology

Example of paper with code

A template for Python packages

Adapter for Pyvista for arbitrary order (discontinuous) Lagrange with Legacy Dolfin.

A python framework for creating image-guided cancer patient digital twins.

Tutorial for DINOs

This repository contains an implementation and a step-by-step tutorial of the distributed Operator Inference algorithm for constructing physics-based data-driven reduced models using distributed me…

GPU acceleration extension for FEniCSx

Multimodal Brain mpMRI segmentation on BraTS 2023 and BraTS 2021 datasets.

How to do various tricky computer things

A workflow to allow Freesurfer recon-all to run on brain image with gliomas

Dimension reduced surrogate construction for parametric PDE maps

CMake Boilerplate for C

📐🔍 Mesh quality inspector

A two-level sparse direct solver for elliptic PDEs

TACC Containers for hIPPYlib/FEniCS

Example applications for the Department of Energy Computational Science Graduate Fellowship

Important concepts in numerical linear algebra and related areas

An Extensible Software Framework for Large-Scale Inverse Problems

Hydra is a framework for elegantly configuring complex applications

A more relaxed `pip freeze`

Drop-in replacement for argparse with added support for config files and environment variables.

SC23 Deep Learning at Scale Tutorial Material

Awesome list of software that I use to do research in medical imaging.