qtQDA contains functions for classification, quantile transformation and quadratic discrimant analysis and several generalized linear model analysis of RNA-Seq data.

# install.packages("devtools")
devtools::install_github("goknurginer/qtQDA")
library(qtQDA)

For complete list of functions and instructions:

library(help = "qtQDA") 

Note that devtools does not build vignettes by default. To view the vignette:

devtools::install_github("goknurginer/qtQDA", build_vignettes = TRUE)
library(qtQDA)
vignette("qtQDA")

The article explaining the method can be found and cited here.