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Starred repositories

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Bloom-filter based minimal perfect hash function library

C++ 279 30 Updated Jul 16, 2025

A rich terminal UI for GitHub that doesn't break your flow.

Go 11,920 403 Updated Jun 19, 2026

A monitor of resources

C++ 32,939 1,055 Updated Jun 19, 2026
Rust 254 18 Updated Jun 2, 2026

Plotting scripts for long read sequencing data

HTML 555 52 Updated Jun 15, 2026

Build native desktop apps with Crystal and a web frontend.

Crystal 26 Updated Jun 2, 2026

Successor of bwa-mem for short-read alignment

C 205 6 Updated Jun 19, 2026

safepoint-based sampling performance profiler for Ruby

Ruby 15 Updated Jun 16, 2026

Bam Read Index - Extract alignments from a bam file by readname

C 29 8 Updated Apr 22, 2024

Jasmine: SV Merging Across Samples

Java 253 22 Updated Dec 20, 2024

Generate a single-page HTML book from Markdown files

HTML 4 Updated Jun 17, 2026

A standalone version of the readability lib of mozilla, in Crystal

Crystal 1 Updated May 29, 2026

Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.

R 212 102 Updated Mar 20, 2024

Miller is like awk, sed, cut, join, and sort for name-indexed data such as CSV, TSV, and tabular JSON

Go 9,917 237 Updated Jun 19, 2026

Configure rubygems.org credential environment variables for use in other GitHub Actions.

TypeScript 14 4 Updated Jun 17, 2026

Sample native Android app written in pure Crystal

Crystal 17 1 Updated Mar 9, 2023

Odin port of unofficial libui-ng build by kojix2

C 1 Updated May 22, 2026

Methylation Phasing for Nanopore Sequencing

Python 51 8 Updated Mar 5, 2023

Code for timing amplifications

R 7 1 Updated Jun 6, 2024
Ruby 289 5 Updated Jun 17, 2026

A tool for reconstructing BFB with long reads

Python 3 Updated Jun 11, 2026

MethPhaser: methylation-based haplotype phasing of human genomes

Python 55 6 Updated Mar 5, 2025

PEACE pipeline to call germline and somatic variants as well as copy number aberrations and reconstruct phylogenetic trees

R 2 Updated Dec 8, 2025

Linear optimization software

C++ 1,664 327 Updated Jun 19, 2026

Framework for Metastatic And Clonal History INtegrative Analysis

Jupyter Notebook 37 12 Updated Mar 5, 2021

A scientific plotting library in Rust

Rust 775 32 Updated Jun 19, 2026
Crystal 5 Updated Apr 9, 2026

MASCoTE (Multiple Allele-specific Simulation of Copy-number Tumor Evolution) is a simulation framework to generate sequencing reads with appropriately corrections for the differences in genome leng…

Python 12 5 Updated Dec 3, 2020

Github Action to set up a Developer Command Prompt for Microsoft Visual C++

TypeScript 34 4 Updated Jun 18, 2026
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