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Variant-subset methods drop sample names and QC fields

Status: Open.

#181 In kr-colab/pg_gpu;

· nspope opened on Aug 12, 2026

compute_region anchors windows at the first variant, not at the region start

Status: Open.

#179 In kr-colab/pg_gpu;

· andrewkern opened on Aug 10, 2026

Stale committed outputs in pg_gpu_skill_walkthrough.ipynb after the multiallelic pass

Status: Open.

#173 In kr-colab/pg_gpu;

· andrewkern opened on Aug 6, 2026

return number of accessible bases in windowed_analysis

Status: Open.

#171 In kr-colab/pg_gpu;

· mufernando opened on Aug 6, 2026

windowed_analysis does not support GenotypeMatrix

Status: Open.

#170 In kr-colab/pg_gpu;

· mufernando opened on Aug 5, 2026

PCA on genotypes

Status: Open.

#169 In kr-colab/pg_gpu;

· mufernando opened on Aug 3, 2026

pg-gpu needs to know if HaplotypeMatrix is phased or not

Status: Open.

#168 In kr-colab/pg_gpu;

· mufernando opened on Jul 31, 2026

Fused windowed engine: boundary variants are assigned to the wrong window by bin_idx

Status: Open.

#166 In kr-colab/pg_gpu;

· nspope opened on Jul 30, 2026

diversity calculation disagrees with allel and sgkit on human 1000 genomes data

Status: Open.

#163 In kr-colab/pg_gpu;

· molpopgen opened on Jul 24, 2026

Streaming + missing_data='exclude' diverges from eager at chunk boundaries (all windowed stats)

Status: Open.

Bug

#159 In kr-colab/pg_gpu;

· nspope opened on Jul 22, 2026

Semantics/docs for distance_stats.pairwise_diffs_diploid

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#156 In kr-colab/pg_gpu;

· nspope opened on Jul 21, 2026

subspace smoothing in local_pca

Status: Open.

Feature

#150 In kr-colab/pg_gpu;

· nspope opened on Jul 17, 2026